public class DolloParsimony
extends java.lang.Object

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static DolloParsimony`	`createInstance()`
`void`	`execute(Phylogeny p, CharacterStateMatrix<CharacterStateMatrix.BinaryStates> external_node_states_matrix)`
`int`	`getCost()`
`CharacterStateMatrix<CharacterStateMatrix.GainLossStates>`	`getGainLossMatrix()`
`CharacterStateMatrix<CharacterStateMatrix.BinaryStates>`	`getInternalStatesMatrix()`
`int`	`getTotalGains()`
`int`	`getTotalLosses()`
`int`	`getTotalUnchanged()`
`void`	`setReturnGainLossMatrix(boolean return_gain_loss)`
`void`	`setReturnInternalStates(boolean return_internal_states)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

public void execute(Phylogeny p,
                    CharacterStateMatrix<CharacterStateMatrix.BinaryStates> external_node_states_matrix)

public CharacterStateMatrix<CharacterStateMatrix.GainLossStates> getGainLossMatrix()

public CharacterStateMatrix<CharacterStateMatrix.BinaryStates> getInternalStatesMatrix()

public void setReturnGainLossMatrix(boolean return_gain_loss)

public void setReturnInternalStates(boolean return_internal_states)

public static DolloParsimony createInstance()

Class DolloParsimony