Package org.biojava.nbio.structure.io
Interface StructureProvider
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- All Known Subinterfaces:
StructureIOFile
- All Known Implementing Classes:
LocalPDBDirectory,MMCIFFileReader,PDBFileReader,SandboxStyleStructureProvider
public interface StructureProviderA class that can provide a protein structure object from somewhere.- Since:
- 3.2
- Author:
- Andreas Prlic
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Method Summary
All Methods Instance Methods Abstract Methods Deprecated Methods Modifier and Type Method Description FileParsingParametersgetFileParsingParameters()Get the parameters that should be used for file parsingStructuregetStructureById(java.lang.String pdbId)get the structure for a PDB IDvoidsetFileParsingParameters(FileParsingParameters params)Deprecated.
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Method Detail
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getStructureById
Structure getStructureById(java.lang.String pdbId) throws StructureException, java.io.IOException
get the structure for a PDB ID- Parameters:
pdbId-- Returns:
- Throws:
StructureExceptionjava.io.IOException
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setFileParsingParameters
void setFileParsingParameters(FileParsingParameters params)
Deprecated.Set the parameters that should be used for file parsing- Parameters:
params- FileParsingParameters
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getFileParsingParameters
FileParsingParameters getFileParsingParameters()
Get the parameters that should be used for file parsing- Returns:
- the FileParsingParameters that are configuring the behavior of the parser
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