java.lang.Object
- org.biojava.nbio.structure.align.gui.AlignmentCalcDB

All Implemented Interfaces:: java.lang.Runnable, AlignmentCalculationRunnable

public class AlignmentCalcDB
extends java.lang.Object
implements AlignmentCalculationRunnable

Field Summary

Fields
Modifier and Type Field Description

static java.lang.String SCOP_VERSION

Constructor Summary

Constructors
Constructor	Description
`AlignmentCalcDB(AlignmentGui parent, Structure s1, java.lang.String name1, UserConfiguration config, java.lang.String outFile, java.lang.Boolean domainSplit)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`cleanup()`
`StructureAlignment`	`getAlgorithm()`
`void`	`interrupt()`	stops what is currently happening and does not continue
`boolean`	`isInterrupted()`
`void`	`run()`
`void`	`setAlgorithm(StructureAlignment algo)`
`void`	`setNrCPUs(int useNrCPUs)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SCOP_VERSION

public static java.lang.String SCOP_VERSION

Constructor Detail

AlignmentCalcDB

public AlignmentCalcDB(AlignmentGui parent,
                       Structure s1,
                       java.lang.String name1,
                       UserConfiguration config,
                       java.lang.String outFile,
                       java.lang.Boolean domainSplit)

Method Detail
- getAlgorithm
```
public StructureAlignment getAlgorithm()
```
- setAlgorithm
```
public void setAlgorithm(StructureAlignment algo)
```
- run
```
public void run()
```
  Specified by:
  
  run in interface java.lang.Runnable
- interrupt
```
public void interrupt()
```
  stops what is currently happening and does not continue
  
  Specified by:
  
  interrupt in interface AlignmentCalculationRunnable
- cleanup
```
public void cleanup()
```
  Specified by:
  
  cleanup in interface AlignmentCalculationRunnable
- setNrCPUs
```
public void setNrCPUs(int useNrCPUs)
```
  Specified by:
  
  setNrCPUs in interface AlignmentCalculationRunnable
- isInterrupted
```
public boolean isInterrupted()
```

Class AlignmentCalcDB

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

SCOP_VERSION

Constructor Detail

AlignmentCalcDB

Method Detail

getAlgorithm

setAlgorithm

run

interrupt

cleanup

setNrCPUs

isInterrupted