Package org.biojava.nbio.structure

Class ResidueNumber

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Comparable<ResidueNumber>
    public class ResidueNumber
extends java.lang.Object
implements java.io.Serializable, java.lang.Comparable<ResidueNumber>
    Everything that is needed to uniquely describe a residue position
    Author:
    Andreas Prlic
    See Also:
    Serialized Form

    • Constructor Detail

      • ResidueNumber

        public ResidueNumber()

      • ResidueNumber

        public ResidueNumber​(java.lang.String chainId,
                     java.lang.Integer residueNumber,
                     java.lang.Character insCode)

    • Method Detail

      • getChainId

        public java.lang.String getChainId()

      • setChainId

        public void setChainId​(java.lang.String chainId)

      • getInsCode

        public java.lang.Character getInsCode()

      • setInsCode

        public void setInsCode​(java.lang.Character insCode)

      • getSeqNum

        public java.lang.Integer getSeqNum()

      • setSeqNum

        public void setSeqNum​(java.lang.Integer seqNum)

      • equals

        public boolean equals​(java.lang.Object obj)
        Overrides:
        equals in class java.lang.Object

      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object
        Returns:
        The residue number and insertion code as a string, eg "74A"
        See Also:
        Object.toString()

      • toPDB

        public java.lang.String toPDB()
        Returns:
        The chain, number, and insertion code as a string, eg "B 74A" or "A 1 "

      • fromString

        public static ResidueNumber fromString​(java.lang.String pdb_code)
        Convert a string representation of a residue number to a residue number object. The string representation can be a integer followed by a character.
        Parameters:
        pdb_code -
        Returns:
        a ResidueNumber object, or null if the input was null

      • compareTo

        public int compareTo​(ResidueNumber other)
        Specified by:
        compareTo in interface java.lang.Comparable<ResidueNumber>

      • printFull

        public java.lang.String printFull()