Class BlastResultBuilder
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- org.biojava.nbio.core.search.io.blast.BlastResultBuilder
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public class BlastResultBuilder extends java.lang.ObjectDesigned by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan- Author:
- Paolo Pavan
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Constructor Summary
Constructors Constructor Description BlastResultBuilder()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description BlastResultcreateBlastResult()BlastResultBuildersetDbFile(java.lang.String dbFile)BlastResultBuildersetHits(java.util.List<Hit> hits)BlastResultBuildersetIterationNumber(int iterationNumber)BlastResultBuildersetProgram(java.lang.String program)BlastResultBuildersetProgramSpecificParameters(java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters)BlastResultBuildersetQueryDef(java.lang.String queryDef)BlastResultBuildersetQueryID(java.lang.String queryID)BlastResultBuildersetQueryLength(int queryLength)BlastResultBuildersetQuerySequence(Sequence s)BlastResultBuildersetReference(java.lang.String reference)BlastResultBuildersetVersion(java.lang.String version)
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Method Detail
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setProgram
public BlastResultBuilder setProgram(java.lang.String program)
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setVersion
public BlastResultBuilder setVersion(java.lang.String version)
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setReference
public BlastResultBuilder setReference(java.lang.String reference)
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setDbFile
public BlastResultBuilder setDbFile(java.lang.String dbFile)
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setProgramSpecificParameters
public BlastResultBuilder setProgramSpecificParameters(java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters)
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setIterationNumber
public BlastResultBuilder setIterationNumber(int iterationNumber)
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setQueryID
public BlastResultBuilder setQueryID(java.lang.String queryID)
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setQueryDef
public BlastResultBuilder setQueryDef(java.lang.String queryDef)
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setQueryLength
public BlastResultBuilder setQueryLength(int queryLength)
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setHits
public BlastResultBuilder setHits(java.util.List<Hit> hits)
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setQuerySequence
public BlastResultBuilder setQuerySequence(Sequence s)
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createBlastResult
public BlastResult createBlastResult()
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