Method Detail

• clone

  public java.lang.Object clone()
                         throws java.lang.CloneNotSupportedException

  Overrides:

  clone in class java.lang.Object

  Throws:

  java.lang.CloneNotSupportedException

• create

  public Phylogeny[] create(java.lang.Object source,
                            java.lang.Object parser)
                     throws java.io.IOException

  Description copied from interface: PhylogenyFactory
  This must create a Phylogeny from source (e.g. an XML file, an alignment, pairwise distances) by using creator (e.g. an XML file parser, an algorithm implementation).

  Specified by:

  create in interface PhylogenyFactory

  Parameters:

  source - a source to create a Phylogeny from

  parser - a means to create a Phylogeny

  Returns:

  a Phylogeny[] based on argument source

  Throws:

  java.io.IOException

• create

  public Phylogeny[] create(java.lang.Object source,
                            java.lang.Object parser,
                            java.lang.String schema_location)
                     throws java.io.IOException

  Throws:

  java.io.IOException

• getInstance

  public static PhylogenyFactory getInstance()