Msa.MSA_FORMAT| Constructor and Description |
|---|
ResampleableMsa(BasicMsa msa) |
| Modifier and Type | Method and Description |
|---|---|
char |
getResidueAt(int row,
int col) |
MolecularSequence |
getSequence(int row) |
void |
resample(int[] resampled_column_positions) |
void |
setResidueAt(int row,
int col,
char residue) |
asSequenceList, createInstance, getColumnAt, getIdentifier, getLength, getNumberOfSequences, getSequence, getSequenceAsString, getType, isGapAt, setIdentifier, toString, writepublic ResampleableMsa(BasicMsa msa)
public final char getResidueAt(int row,
int col)
getResidueAt in interface MsagetResidueAt in class BasicMsapublic final void resample(int[] resampled_column_positions)
public final void setResidueAt(int row,
int col,
char residue)
setResidueAt in interface MsasetResidueAt in class BasicMsapublic MolecularSequence getSequence(int row)
getSequence in interface MsagetSequence in class BasicMsa