Field Detail

• SERVICELOCATION

  public static final java.lang.String SERVICELOCATION

  See Also:

  Constant Field Values

Constructor Detail

• PdbIdLists

  public PdbIdLists()

Method Detail

• getCurrentPDBIds

  public static java.util.Set<java.lang.String> getCurrentPDBIds()
                                                          throws java.io.IOException

  get the list of current PDB IDs

  Returns:

  list of current PDB IDs

  Throws:

  java.io.IOException

• getAllViruses

  public static java.util.Set<java.lang.String> getAllViruses()
                                                       throws java.io.IOException

  Get the PDB IDs of all virus structures in the current PDB

  Returns:

  list of all virus structures

  Throws:

  java.io.IOException

• getNMRStructures

  public static java.util.Set<java.lang.String> getNMRStructures()
                                                          throws java.io.IOException

  get list of all current NMR structures

  Returns:

  list of NMR structures

  Throws:

  java.io.IOException

• getGagPolyproteins

  public static java.util.Set<java.lang.String> getGagPolyproteins()
                                                            throws java.io.IOException

  get all PDB IDs of gag-polyproteins

  Returns:

  list of PDB IDs

  Throws:

  java.io.IOException

• getTransmembraneProteins

  public static java.util.Set<java.lang.String> getTransmembraneProteins()
                                                                  throws java.io.IOException

  get all Transmembrane proteins

  Returns:

  list of PDB IDs

  Throws:

  java.io.IOException

• getNucleotides

  public static java.util.Set<java.lang.String> getNucleotides()
                                                        throws java.io.IOException

  Throws:

  java.io.IOException

• getRibosomes

  public static java.util.Set<java.lang.String> getRibosomes()
                                                      throws java.io.IOException

  Throws:

  java.io.IOException

• postQuery

  public static java.util.Set<java.lang.String> postQuery(java.lang.String xml)
                                                   throws java.io.IOException

  post am XML query (PDB XML query format) to the RESTful RCSB web service

  Parameters:

  xml -

  Returns:

  a list of PDB ids.

  Throws:

  java.io.IOException

• doPOST

  public static java.io.InputStream doPOST(java.net.URL url,
                                           java.lang.String data)
                                    throws java.io.IOException

  do a POST to a URL and return the response stream for further processing elsewhere.

  Parameters:

  url -

  Returns:

  Throws:

  java.io.IOException

• main

  public static void main(java.lang.String[] args)