PDBBioAssemblyParser

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- org.biojava.nbio.structure.io.PDBBioAssemblyParser

```
public class PDBBioAssemblyParser
extends java.lang.Object
```
Parses REMARK 350 records in a PDB file and creates transformations to construct the quaternary structure of a protein from an asymmetric unit

Author:

Peter Rose, Andreas Prlic

Constructor Summary

Constructors
Constructor and Description

PDBBioAssemblyParser()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`java.util.Map<java.lang.Integer,BioAssemblyInfo>`	`getTransformationMap()` Returns a map of bioassembly transformations
`void`	`pdb_REMARK_350_Handler(java.lang.String line)` Parses REMARK 350 line.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PDBBioAssemblyParser
```
public PDBBioAssemblyParser()
```
- Method Detail
  - pdb_REMARK_350_Handler
```
public void pdb_REMARK_350_Handler(java.lang.String line)
```
    Parses REMARK 350 line. See format description: http://www.wwpdb.org/documentation/format33/remarks2.html
    
    Parameters:
    
    line -
  - getTransformationMap
```
public java.util.Map<java.lang.Integer,BioAssemblyInfo> getTransformationMap()
```
    Returns a map of bioassembly transformations
    
    Returns:

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method