UniprotToFasta

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java.lang.Object
- org.biojava.nbio.genome.uniprot.UniprotToFasta

public class UniprotToFasta
extends java.lang.Object

Author:: Scooter

Constructor Summary

Constructors
Constructor and Description

UniprotToFasta()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static void`	`main(java.lang.String[] args)`
`void`	`process(java.lang.String uniprotDatFileName, java.lang.String fastaFileName)` Convert a Uniprot sequence file to a fasta file.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - UniprotToFasta
```
public UniprotToFasta()
```
- Method Detail
  - main
```
public static void main(java.lang.String[] args)
```
  - process
```
public void process(java.lang.String uniprotDatFileName,
                    java.lang.String fastaFileName)
             throws java.lang.Exception
```
    Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database
    
    Parameters:
    
    uniprotDatFileName -
    
    fastaFileName -
    
    Throws:
    
    java.lang.Exception

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