SequenceAsStringHelper

java.lang.Object
- org.biojava.nbio.core.sequence.storage.SequenceAsStringHelper<C>

```
public class SequenceAsStringHelper<C extends Compound>
extends java.lang.Object
```
This is a common method that can be used across multiple storage/proxy implementations to handle Negative strand and other interesting elements of sequence data.

Author:

Scooter Willis

Constructor Summary

Constructors
Constructor and Description

SequenceAsStringHelper()

Constructors
Constructor and Description
`SequenceAsStringHelper()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`java.lang.String`	`getSequenceAsString(java.util.List<C> parsedCompounds, CompoundSet<C> compoundSet, java.lang.Integer bioBegin, java.lang.Integer bioEnd, Strand strand)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SequenceAsStringHelper
```
public SequenceAsStringHelper()
```

Method Detail

getSequenceAsString

public java.lang.String getSequenceAsString(java.util.List<C> parsedCompounds,
                                            CompoundSet<C> compoundSet,
                                            java.lang.Integer bioBegin,
                                            java.lang.Integer bioEnd,
                                            Strand strand)

Parameters:: parsedCompounds -; compoundSet -; bioBegin -; bioEnd -; strand -
Returns:

Class SequenceAsStringHelper<C extends Compound>

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SequenceAsStringHelper

Method Detail

getSequenceAsString