CodonCompound

java.lang.Object
- org.biojava.nbio.core.sequence.template.AbstractCompound
- - org.biojava.nbio.core.sequence.compound.CodonCompound

All Implemented Interfaces:

Compound
```
public class CodonCompound
extends AbstractCompound
```
Define a codon

Author:

Andy Yates

Constructor Summary

Constructors
Constructor and Description

CodonCompound(NucleotideCompound one, NucleotideCompound two, NucleotideCompound three, boolean start)

Constructors
Constructor and Description
`CodonCompound(NucleotideCompound one, NucleotideCompound two, NucleotideCompound three, boolean start)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`equals(java.lang.Object obj)`
`boolean`	`equalsIgnoreCase(Compound compound)`
`java.lang.String`	`getDescription()`
`java.lang.String`	`getLongName()`
`java.lang.Float`	`getMolecularWeight()`
`NucleotideCompound`	`getOne()`
`java.lang.String`	`getShortName()`
`NucleotideCompound`	`getThree()`
`NucleotideCompound`	`getTwo()`
`int`	`hashCode()`
`boolean`	`isStart()`
`void`	`setDescription(java.lang.String description)`
`void`	`setLongName(java.lang.String longName)`
`void`	`setMolecularWeight(java.lang.Float molecularWeight)`
`void`	`setShortName(java.lang.String shortName)`

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound
getBase, getUpperedBase, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - CodonCompound
```
public CodonCompound(NucleotideCompound one,
                     NucleotideCompound two,
                     NucleotideCompound three,
                     boolean start)
```
- Method Detail
  - equalsIgnoreCase
```
public boolean equalsIgnoreCase(Compound compound)
```
    Specified by:
    
    equalsIgnoreCase in interface Compound
    
    Overrides:
    
    equalsIgnoreCase in class AbstractCompound
  - equals
```
public boolean equals(java.lang.Object obj)
```
    Overrides:
    
    equals in class AbstractCompound
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class AbstractCompound
  - getOne
```
public NucleotideCompound getOne()
```
  - getTwo
```
public NucleotideCompound getTwo()
```
  - getThree
```
public NucleotideCompound getThree()
```
  - isStart
```
public boolean isStart()
```
  - getDescription
```
public java.lang.String getDescription()
```
    Specified by:
    
    getDescription in interface Compound
    
    Overrides:
    
    getDescription in class AbstractCompound
  - getLongName
```
public java.lang.String getLongName()
```
    Specified by:
    
    getLongName in interface Compound
    
    Overrides:
    
    getLongName in class AbstractCompound
  - getMolecularWeight
```
public java.lang.Float getMolecularWeight()
```
    Specified by:
    
    getMolecularWeight in interface Compound
    
    Overrides:
    
    getMolecularWeight in class AbstractCompound
  - getShortName
```
public java.lang.String getShortName()
```
    Specified by:
    
    getShortName in interface Compound
    
    Overrides:
    
    getShortName in class AbstractCompound
  - setDescription
```
public void setDescription(java.lang.String description)
```
    Specified by:
    
    setDescription in interface Compound
    
    Overrides:
    
    setDescription in class AbstractCompound
  - setLongName
```
public void setLongName(java.lang.String longName)
```
    Specified by:
    
    setLongName in interface Compound
    
    Overrides:
    
    setLongName in class AbstractCompound
  - setMolecularWeight
```
public void setMolecularWeight(java.lang.Float molecularWeight)
```
    Specified by:
    
    setMolecularWeight in interface Compound
    
    Overrides:
    
    setMolecularWeight in class AbstractCompound
  - setShortName
```
public void setShortName(java.lang.String shortName)
```
    Specified by:
    
    setShortName in interface Compound
    
    Overrides:
    
    setShortName in class AbstractCompound

Class CodonCompound

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound

Methods inherited from class java.lang.Object

Constructor Detail

CodonCompound

Method Detail

equalsIgnoreCase

equals

hashCode

getOne

getTwo

getThree

isStart

getDescription

getLongName

getMolecularWeight

getShortName

setDescription

setLongName

setMolecularWeight

setShortName