BlastResult

java.lang.Object
- org.biojava.nbio.core.search.io.Result
- - org.biojava.nbio.core.search.io.blast.BlastResult

All Implemented Interfaces:

java.lang.Iterable<Hit>
```
public class BlastResult
extends Result
```
This class models a Blast/Blast plus result. You will find one of this for every query sequence specified in the run. Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:

Paolo Pavan

Constructor Summary

Constructors
Constructor and Description
`BlastResult(java.lang.String program, java.lang.String version, java.lang.String reference, java.lang.String dbFile, java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters, int iterationNumber, java.lang.String queryID, java.lang.String queryDef, int queryLength, java.util.List<Hit> hits, Sequence querySequence)`

Method Summary
- Methods inherited from class org.biojava.nbio.core.search.io.Result
  equals, getDbFile, getHitCounter, getIterationNumber, getProgram, getProgramSpecificParameter, getProgramSpecificParametersList, getQueryDef, getQueryID, getQueryLength, getQuerySequence, getReference, getVersion, hashCode, iterator
- Methods inherited from class java.lang.Object
  clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait
- Methods inherited from interface java.lang.Iterable
  forEach, spliterator

Constructor Detail

BlastResult

public BlastResult(java.lang.String program,
                   java.lang.String version,
                   java.lang.String reference,
                   java.lang.String dbFile,
                   java.util.HashMap<java.lang.String,java.lang.String> programSpecificParameters,
                   int iterationNumber,
                   java.lang.String queryID,
                   java.lang.String queryDef,
                   int queryLength,
                   java.util.List<Hit> hits,
                   Sequence querySequence)

Class BlastResult

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.search.io.Result

Methods inherited from class java.lang.Object

Methods inherited from interface java.lang.Iterable

Constructor Detail

BlastResult