org.biojava.nbio.genome.query

Class OutputHitsGFF

java.lang.Object

org.biojava.nbio.genome.query.OutputHitsGFF

public class OutputHitsGFF
extends java.lang.Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor and Description
OutputHitsGFF()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
void	process(java.io.File blastXMLFile, java.io.File gffFile, java.io.File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OutputHitsGFF

public OutputHitsGFF()

Method Detail

process

public void process(java.io.File blastXMLFile,
           java.io.File gffFile,
           java.io.File gffOutputFile,
           double maxEScore,
           double percentageAligned,
           boolean includeFrameShift,
           boolean includeNegativeStrand)
             throws java.lang.Exception

Throws:

java.lang.Exception

main

public static void main(java.lang.String[] args)