org.forester.io.writers

Class SequenceWriter

java.lang.Object

org.forester.io.writers.SequenceWriter

public class SequenceWriter
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SequenceWriter.SEQ_FORMAT

Constructor Summary

Constructors

Constructor and Description
SequenceWriter()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
static java.lang.StringBuilder	toFasta(Sequence seq, int width)
static void	toFasta(Sequence seq, java.io.Writer w, int width)
static void	writeSeqs(java.util.List<Sequence> seqs, java.io.Writer writer, SequenceWriter.SEQ_FORMAT format, int width)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceWriter

public SequenceWriter()

Method Detail

main

public static void main(java.lang.String[] args)

toFasta

public static java.lang.StringBuilder toFasta(Sequence seq,
                              int width)

toFasta

public static void toFasta(Sequence seq,
           java.io.Writer w,
           int width)
                    throws java.io.IOException

Throws:

java.io.IOException

writeSeqs

public static void writeSeqs(java.util.List<Sequence> seqs,
             java.io.Writer writer,
             SequenceWriter.SEQ_FORMAT format,
             int width)
                      throws java.io.IOException

Throws:

java.io.IOException