org.biojava3.phylo

Class Comparison

java.lang.Object

org.biojava3.phylo.Comparison

public class Comparison
extends java.lang.Object

Author:

willishf

Constructor Summary

Constructors

Constructor and Description
Comparison()

Method Summary

Methods

Modifier and Type	Method and Description
static boolean	isGap(char c) DOCUMENT ME!
static float	PID(java.lang.String seq1, java.lang.String seq2) this is a gapped PID calculation
static float	PID(java.lang.String seq1, java.lang.String seq2, int start, int end)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Comparison

public Comparison()

Method Detail

PID

public static final float PID(java.lang.String seq1,
        java.lang.String seq2)

this is a gapped PID calculation

Parameters:

s1 - SequenceI

s2 - SequenceI

Returns:

float

PID

public static final float PID(java.lang.String seq1,
        java.lang.String seq2,
        int start,
        int end)

isGap

public static final boolean isGap(char c)

DOCUMENT ME!

Parameters:

c - DOCUMENT ME!

Returns:

DOCUMENT ME!