org.biojava3.alignment.aaindex

Class DefaultAAIndexProvider

java.lang.Object

org.biojava3.alignment.aaindex.DefaultAAIndexProvider

All Implemented Interfaces:

AAIndexProvider

public class DefaultAAIndexProvider
extends java.lang.Object
implements AAIndexProvider

The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor and Description
DefaultAAIndexProvider()

Method Summary

Methods

Modifier and Type	Method and Description
java.io.InputStream	getInputStreamToAAindexFile()
SubstitutionMatrix<AminoAcidCompound>	getMatrix(java.lang.String matrixName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DefaultAAIndexProvider

public DefaultAAIndexProvider()

Method Detail

getMatrix

public SubstitutionMatrix<AminoAcidCompound> getMatrix(java.lang.String matrixName)

Specified by:

getMatrix in interface AAIndexProvider

getInputStreamToAAindexFile

public java.io.InputStream getInputStreamToAAindexFile()