org.biojava.bio.structure.align.xml

Class AFPChainFlipper

java.lang.Object

org.biojava.bio.structure.align.xml.AFPChainFlipper

public class AFPChainFlipper
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
AFPChainFlipper()

Method Summary

Methods

Modifier and Type	Method and Description
static AFPChain	flipChain(AFPChain o) Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AFPChainFlipper

public AFPChainFlipper()

Method Detail

flipChain

public static AFPChain flipChain(AFPChain o)
                          throws StructureException

Flip the position of name1 and name2 (as well as all underlying data) in an AFPChain. This is a utility function for AFPChainXMLParser. You will have to call AFPCHainXMLParser.rebuildAFPChain in order to get twisted groups...

Parameters:

o - ... the original AFPCHain that should be flipped

Returns:

a cloned AFPCHain which the positions of name1 and name2 flipped.

Throws:

StructureException