org.forester.io.parsers.nexus

Class NexusPhylogeniesParser

java.lang.Object

org.forester.io.parsers.nexus.NexusPhylogeniesParser

All Implemented Interfaces:

PhylogenyParser

public class NexusPhylogeniesParser
extends java.lang.Object
implements PhylogenyParser

Constructor Summary

Constructors

Constructor and Description
NexusPhylogeniesParser()

Method Summary

Methods

Modifier and Type	Method and Description
Phylogeny[]	parse()
void	setIgnoreQuotes(boolean ignore_quotes_in_nh_data)
void	setReplaceUnderscores(boolean replace_underscores)
void	setSource(java.lang.Object nexus_source)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NexusPhylogeniesParser

public NexusPhylogeniesParser()

Method Detail

parse

public Phylogeny[] parse()
                  throws java.io.IOException,
                         NHXFormatException

Specified by:

parse in interface PhylogenyParser

Throws:

java.io.IOException

NHXFormatException

setIgnoreQuotes

public void setIgnoreQuotes(boolean ignore_quotes_in_nh_data)

setReplaceUnderscores

public void setReplaceUnderscores(boolean replace_underscores)

setSource

public void setSource(java.lang.Object nexus_source)
               throws PhylogenyParserException,
                      java.io.IOException

Specified by:

setSource in interface PhylogenyParser

Throws:

PhylogenyParserException

java.io.IOException