| Interface | Description |
|---|---|
| AAIndexProvider |
| Class | Description |
|---|---|
| AAindexFactory |
Factory class to get Providers for substitution matrices the are provided by the AAINDEX database.
|
| AAIndexFileParser | |
| DefaultAAIndexProvider |
The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory
|
| ScaledSubstitutionMatrix |
The biojava-alignment module represents substitution matrices with short
values.
|