org.biojava.bio.structure.scop

Class BerkeleyScopInstallation

java.lang.Object

org.biojava.bio.structure.scop.ScopInstallation

org.biojava.bio.structure.scop.BerkeleyScopInstallation

All Implemented Interfaces:

ScopDatabase

public class BerkeleyScopInstallation
extends ScopInstallation
implements ScopDatabase

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	claFileName
static java.lang.String	comFileName
static java.lang.String	desFileName
static java.lang.String	hieFileName

Fields inherited from class org.biojava.bio.structure.scop.ScopInstallation

DEFAULT_VERSION, FILESPLIT, NEWLINE, SCOP_DOWNLOAD, scopDownloadURL, scopVersion

Constructor Summary

Constructors

Constructor and Description
BerkeleyScopInstallation()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	downloadClaFile()
protected void	downloadComFile()
protected void	downloadDesFile()
protected void	downloadHieFile()

Methods inherited from class org.biojava.bio.structure.scop.ScopInstallation

downloadFileFromRemote, ensureClaInstalled, ensureComInstalled, ensureDesInstalled, ensureHieInstalled, filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getCacheLocation, getClaFilename, getComFilename, getComments, getDesFilename, getDomainByScopID, getDomainsForPDB, getHieFilename, getScopDescriptionBySunid, getScopDomainsBySunid, getScopDownloadURL, getScopNode, getScopVersion, getTree, nullifyComments, setCacheLocation, setScopDownloadURL, setScopVersion

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.bio.structure.scop.ScopDatabase

filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getComments, getDomainByScopID, getDomainsForPDB, getScopDescriptionBySunid, getScopDomainsBySunid, getScopNode, getScopVersion, getTree

Field Detail

claFileName

public static final java.lang.String claFileName

See Also:

Constant Field Values

desFileName

public static final java.lang.String desFileName

See Also:

Constant Field Values

hieFileName

public static final java.lang.String hieFileName

See Also:

Constant Field Values

comFileName

public static final java.lang.String comFileName

See Also:

Constant Field Values

Constructor Detail

BerkeleyScopInstallation

public BerkeleyScopInstallation()

Method Detail

downloadClaFile

protected void downloadClaFile()
                        throws java.io.FileNotFoundException,
                               java.io.IOException

Overrides:

downloadClaFile in class ScopInstallation

Throws:

java.io.FileNotFoundException

java.io.IOException

downloadDesFile

protected void downloadDesFile()
                        throws java.io.FileNotFoundException,
                               java.io.IOException

Overrides:

downloadDesFile in class ScopInstallation

Throws:

java.io.FileNotFoundException

java.io.IOException

downloadHieFile

protected void downloadHieFile()
                        throws java.io.FileNotFoundException,
                               java.io.IOException

Overrides:

downloadHieFile in class ScopInstallation

Throws:

java.io.FileNotFoundException

java.io.IOException

downloadComFile

protected void downloadComFile()
                        throws java.io.FileNotFoundException,
                               java.io.IOException

Overrides:

downloadComFile in class ScopInstallation

Throws:

java.io.FileNotFoundException

java.io.IOException