Package org.biojava.naming

Class ObdaContext

  • All Implemented Interfaces:
    javax.naming.Context, javax.naming.directory.DirContext
    public class ObdaContext
extends java.lang.Object
implements javax.naming.directory.DirContext
    Author:
    Matthew Pocock

    • Field Summary

      • Fields inherited from interface javax.naming.Context

        APPLET, AUTHORITATIVE, BATCHSIZE, DNS_URL, INITIAL_CONTEXT_FACTORY, LANGUAGE, OBJECT_FACTORIES, PROVIDER_URL, REFERRAL, SECURITY_AUTHENTICATION, SECURITY_CREDENTIALS, SECURITY_PRINCIPAL, SECURITY_PROTOCOL, STATE_FACTORIES, URL_PKG_PREFIXES

      • Fields inherited from interface javax.naming.directory.DirContext

        ADD_ATTRIBUTE, REMOVE_ATTRIBUTE, REPLACE_ATTRIBUTE

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.Object addToEnvironment​(java.lang.String propName, java.lang.Object propVal)  
      void bind​(java.lang.String name, java.lang.Object obj)  
      void bind​(java.lang.String name, java.lang.Object obj, javax.naming.directory.Attributes attrs)  
      void bind​(javax.naming.Name name, java.lang.Object obj)  
      void bind​(javax.naming.Name name, java.lang.Object obj, javax.naming.directory.Attributes attrs)  
      void close()  
      java.lang.String composeName​(java.lang.String name, java.lang.String prefix)  
      javax.naming.Name composeName​(javax.naming.Name name, javax.naming.Name prefix)  
      javax.naming.Context createSubcontext​(java.lang.String name)  
      javax.naming.directory.DirContext createSubcontext​(java.lang.String name, javax.naming.directory.Attributes attrs)  
      javax.naming.Context createSubcontext​(javax.naming.Name name)  
      javax.naming.directory.DirContext createSubcontext​(javax.naming.Name name, javax.naming.directory.Attributes attrs)  
      void destroySubcontext​(java.lang.String name)  
      void destroySubcontext​(javax.naming.Name name)  
      javax.naming.directory.Attributes getAttributes​(java.lang.String name)  
      javax.naming.directory.Attributes getAttributes​(java.lang.String name, java.lang.String[] attrIds)  
      javax.naming.directory.Attributes getAttributes​(javax.naming.Name name)  
      javax.naming.directory.Attributes getAttributes​(javax.naming.Name name, java.lang.String[] attrIds)  
      java.util.Hashtable getEnvironment()  
      protected javax.naming.Name getMyComponents​(javax.naming.Name name)  
      java.lang.String getNameInNamespace()  
      javax.naming.NameParser getNameParser​(java.lang.String name)  
      javax.naming.NameParser getNameParser​(javax.naming.Name name)  
      javax.naming.directory.DirContext getSchema​(java.lang.String name)  
      javax.naming.directory.DirContext getSchema​(javax.naming.Name name)  
      javax.naming.directory.DirContext getSchemaClassDefinition​(java.lang.String name)  
      javax.naming.directory.DirContext getSchemaClassDefinition​(javax.naming.Name name)  
      javax.naming.NamingEnumeration list​(java.lang.String name)  
      javax.naming.NamingEnumeration list​(javax.naming.Name name)  
      javax.naming.NamingEnumeration listBindings​(java.lang.String name)  
      javax.naming.NamingEnumeration listBindings​(javax.naming.Name name)  
      java.lang.Object lookup​(java.lang.String name)  
      java.lang.Object lookup​(javax.naming.Name name)  
      java.lang.Object lookupLink​(java.lang.String name)  
      java.lang.Object lookupLink​(javax.naming.Name name)  
      void modifyAttributes​(java.lang.String name, int mod_op, javax.naming.directory.Attributes attrs)  
      void modifyAttributes​(java.lang.String name, javax.naming.directory.ModificationItem[] mods)  
      void modifyAttributes​(javax.naming.Name name, int mod_op, javax.naming.directory.Attributes attrs)  
      void modifyAttributes​(javax.naming.Name name, javax.naming.directory.ModificationItem[] mods)  
      void rebind​(java.lang.String name, java.lang.Object obj)  
      void rebind​(java.lang.String name, java.lang.Object obj, javax.naming.directory.Attributes attrs)  
      void rebind​(javax.naming.Name name, java.lang.Object obj)  
      void rebind​(javax.naming.Name name, java.lang.Object obj, javax.naming.directory.Attributes attrs)  
      java.lang.Object removeFromEnvironment​(java.lang.String propName)  
      void rename​(java.lang.String oldName, java.lang.String newName)  
      void rename​(javax.naming.Name oldName, javax.naming.Name newName)  
      javax.naming.NamingEnumeration search​(java.lang.String name, java.lang.String filterExpr, java.lang.Object[] filterArgs, javax.naming.directory.SearchControls cons)  
      javax.naming.NamingEnumeration search​(java.lang.String name, java.lang.String filter, javax.naming.directory.SearchControls cons)  
      javax.naming.NamingEnumeration search​(java.lang.String name, javax.naming.directory.Attributes matchingAttributes)  
      javax.naming.NamingEnumeration search​(java.lang.String name, javax.naming.directory.Attributes matchingAttributes, java.lang.String[] attributesToReturn)  
      javax.naming.NamingEnumeration search​(javax.naming.Name name, java.lang.String filterExpr, java.lang.Object[] filterArgs, javax.naming.directory.SearchControls cons)  
      javax.naming.NamingEnumeration search​(javax.naming.Name name, java.lang.String filter, javax.naming.directory.SearchControls cons)  
      javax.naming.NamingEnumeration search​(javax.naming.Name name, javax.naming.directory.Attributes matchingAttrs)  
      javax.naming.NamingEnumeration search​(javax.naming.Name name, javax.naming.directory.Attributes matchingAttributes, java.lang.String[] attributesToReturn)  
      void unbind​(java.lang.String name)  
      void unbind​(javax.naming.Name name)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Method Detail

      • getMyComponents

        protected javax.naming.Name getMyComponents​(javax.naming.Name name)
                                     throws javax.naming.NamingException
        Throws:
        javax.naming.NamingException

      • getNameInNamespace

        public java.lang.String getNameInNamespace()
                                    throws javax.naming.NamingException
        Specified by:
        getNameInNamespace in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • composeName

        public javax.naming.Name composeName​(javax.naming.Name name,
                                     javax.naming.Name prefix)
                              throws javax.naming.NamingException
        Specified by:
        composeName in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • lookup

        public java.lang.Object lookup​(javax.naming.Name name)
                        throws javax.naming.NamingException
        Specified by:
        lookup in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • list

        public javax.naming.NamingEnumeration list​(javax.naming.Name name)
                                    throws javax.naming.NamingException
        Specified by:
        list in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • listBindings

        public javax.naming.NamingEnumeration listBindings​(javax.naming.Name name)
                                            throws javax.naming.NamingException
        Specified by:
        listBindings in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • bind

        public void bind​(javax.naming.Name name,
                 java.lang.Object obj)
          throws javax.naming.NamingException
        Specified by:
        bind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • rebind

        public void rebind​(javax.naming.Name name,
                   java.lang.Object obj)
            throws javax.naming.NamingException
        Specified by:
        rebind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • unbind

        public void unbind​(javax.naming.Name name)
            throws javax.naming.NamingException
        Specified by:
        unbind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • rename

        public void rename​(javax.naming.Name oldName,
                   javax.naming.Name newName)
            throws javax.naming.NamingException
        Specified by:
        rename in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • createSubcontext

        public javax.naming.Context createSubcontext​(javax.naming.Name name)
                                      throws javax.naming.NamingException
        Specified by:
        createSubcontext in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • destroySubcontext

        public void destroySubcontext​(javax.naming.Name name)
                       throws javax.naming.NamingException
        Specified by:
        destroySubcontext in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • getNameParser

        public javax.naming.NameParser getNameParser​(javax.naming.Name name)
                                      throws javax.naming.NamingException
        Specified by:
        getNameParser in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • composeName

        public java.lang.String composeName​(java.lang.String name,
                                    java.lang.String prefix)
                             throws javax.naming.NamingException
        Specified by:
        composeName in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • addToEnvironment

        public java.lang.Object addToEnvironment​(java.lang.String propName,
                                         java.lang.Object propVal)
                                  throws javax.naming.NamingException
        Specified by:
        addToEnvironment in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • removeFromEnvironment

        public java.lang.Object removeFromEnvironment​(java.lang.String propName)
                                       throws javax.naming.NamingException
        Specified by:
        removeFromEnvironment in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • getEnvironment

        public java.util.Hashtable getEnvironment()
                                   throws javax.naming.NamingException
        Specified by:
        getEnvironment in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • close

        public void close()
           throws javax.naming.NamingException
        Specified by:
        close in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • list

        public javax.naming.NamingEnumeration list​(java.lang.String name)
                                    throws javax.naming.NamingException
        Specified by:
        list in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • listBindings

        public javax.naming.NamingEnumeration listBindings​(java.lang.String name)
                                            throws javax.naming.NamingException
        Specified by:
        listBindings in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • lookup

        public java.lang.Object lookup​(java.lang.String name)
                        throws javax.naming.NamingException
        Specified by:
        lookup in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • lookupLink

        public java.lang.Object lookupLink​(javax.naming.Name name)
                            throws javax.naming.NamingException
        Specified by:
        lookupLink in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • getAttributes

        public javax.naming.directory.Attributes getAttributes​(javax.naming.Name name)
                                                throws javax.naming.NamingException
        Specified by:
        getAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getAttributes

        public javax.naming.directory.Attributes getAttributes​(javax.naming.Name name,
                                                       java.lang.String[] attrIds)
                                                throws javax.naming.NamingException
        Specified by:
        getAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • modifyAttributes

        public void modifyAttributes​(javax.naming.Name name,
                             int mod_op,
                             javax.naming.directory.Attributes attrs)
                      throws javax.naming.NamingException
        Specified by:
        modifyAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • modifyAttributes

        public void modifyAttributes​(javax.naming.Name name,
                             javax.naming.directory.ModificationItem[] mods)
                      throws javax.naming.NamingException
        Specified by:
        modifyAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • bind

        public void bind​(javax.naming.Name name,
                 java.lang.Object obj,
                 javax.naming.directory.Attributes attrs)
          throws javax.naming.NamingException
        Specified by:
        bind in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • rebind

        public void rebind​(javax.naming.Name name,
                   java.lang.Object obj,
                   javax.naming.directory.Attributes attrs)
            throws javax.naming.NamingException
        Specified by:
        rebind in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • createSubcontext

        public javax.naming.directory.DirContext createSubcontext​(javax.naming.Name name,
                                                          javax.naming.directory.Attributes attrs)
                                                   throws javax.naming.NamingException
        Specified by:
        createSubcontext in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getSchema

        public javax.naming.directory.DirContext getSchema​(javax.naming.Name name)
                                            throws javax.naming.NamingException
        Specified by:
        getSchema in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getSchemaClassDefinition

        public javax.naming.directory.DirContext getSchemaClassDefinition​(javax.naming.Name name)
                                                           throws javax.naming.NamingException
        Specified by:
        getSchemaClassDefinition in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(javax.naming.Name name,
                                             javax.naming.directory.Attributes matchingAttrs)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(javax.naming.Name name,
                                             java.lang.String filterExpr,
                                             java.lang.Object[] filterArgs,
                                             javax.naming.directory.SearchControls cons)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(javax.naming.Name name,
                                             javax.naming.directory.Attributes matchingAttributes,
                                             java.lang.String[] attributesToReturn)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(javax.naming.Name name,
                                             java.lang.String filter,
                                             javax.naming.directory.SearchControls cons)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • bind

        public void bind​(java.lang.String name,
                 java.lang.Object obj)
          throws javax.naming.NamingException
        Specified by:
        bind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • rebind

        public void rebind​(java.lang.String name,
                   java.lang.Object obj)
            throws javax.naming.NamingException
        Specified by:
        rebind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • unbind

        public void unbind​(java.lang.String name)
            throws javax.naming.NamingException
        Specified by:
        unbind in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • rename

        public void rename​(java.lang.String oldName,
                   java.lang.String newName)
            throws javax.naming.NamingException
        Specified by:
        rename in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • createSubcontext

        public javax.naming.Context createSubcontext​(java.lang.String name)
                                      throws javax.naming.NamingException
        Specified by:
        createSubcontext in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • destroySubcontext

        public void destroySubcontext​(java.lang.String name)
                       throws javax.naming.NamingException
        Specified by:
        destroySubcontext in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • getNameParser

        public javax.naming.NameParser getNameParser​(java.lang.String name)
                                      throws javax.naming.NamingException
        Specified by:
        getNameParser in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • lookupLink

        public java.lang.Object lookupLink​(java.lang.String name)
                            throws javax.naming.NamingException
        Specified by:
        lookupLink in interface javax.naming.Context
        Throws:
        javax.naming.NamingException

      • getAttributes

        public javax.naming.directory.Attributes getAttributes​(java.lang.String name)
                                                throws javax.naming.NamingException
        Specified by:
        getAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getAttributes

        public javax.naming.directory.Attributes getAttributes​(java.lang.String name,
                                                       java.lang.String[] attrIds)
                                                throws javax.naming.NamingException
        Specified by:
        getAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • modifyAttributes

        public void modifyAttributes​(java.lang.String name,
                             int mod_op,
                             javax.naming.directory.Attributes attrs)
                      throws javax.naming.NamingException
        Specified by:
        modifyAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • modifyAttributes

        public void modifyAttributes​(java.lang.String name,
                             javax.naming.directory.ModificationItem[] mods)
                      throws javax.naming.NamingException
        Specified by:
        modifyAttributes in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • bind

        public void bind​(java.lang.String name,
                 java.lang.Object obj,
                 javax.naming.directory.Attributes attrs)
          throws javax.naming.NamingException
        Specified by:
        bind in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • rebind

        public void rebind​(java.lang.String name,
                   java.lang.Object obj,
                   javax.naming.directory.Attributes attrs)
            throws javax.naming.NamingException
        Specified by:
        rebind in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • createSubcontext

        public javax.naming.directory.DirContext createSubcontext​(java.lang.String name,
                                                          javax.naming.directory.Attributes attrs)
                                                   throws javax.naming.NamingException
        Specified by:
        createSubcontext in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getSchema

        public javax.naming.directory.DirContext getSchema​(java.lang.String name)
                                            throws javax.naming.NamingException
        Specified by:
        getSchema in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • getSchemaClassDefinition

        public javax.naming.directory.DirContext getSchemaClassDefinition​(java.lang.String name)
                                                           throws javax.naming.NamingException
        Specified by:
        getSchemaClassDefinition in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(java.lang.String name,
                                             javax.naming.directory.Attributes matchingAttributes,
                                             java.lang.String[] attributesToReturn)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(java.lang.String name,
                                             javax.naming.directory.Attributes matchingAttributes)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(java.lang.String name,
                                             java.lang.String filter,
                                             javax.naming.directory.SearchControls cons)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException

      • search

        public javax.naming.NamingEnumeration search​(java.lang.String name,
                                             java.lang.String filterExpr,
                                             java.lang.Object[] filterArgs,
                                             javax.naming.directory.SearchControls cons)
                                      throws javax.naming.NamingException
        Specified by:
        search in interface javax.naming.directory.DirContext
        Throws:
        javax.naming.NamingException