Package org.biojava.bio.structure.io.mmcif.chem

Class ChemCompTools

java.lang.Object

org.biojava.bio.structure.io.mmcif.chem.ChemCompTools

public class ChemCompTools
extends java.lang.Object

Some tools for working with chemical compounds.

Since:

1.7

Author:

Andreas Prlic

Constructor Summary

Constructors

Constructor	Description
ChemCompTools()

Method Summary

Modifier and Type	Method	Description
static java.lang.Character	getAminoOneLetter(java.lang.String chemCompId)
static java.lang.String	getAminoThreeLetter(java.lang.Character c)
static java.lang.Character	getDNAOneLetter(java.lang.String chemCompId)
static java.lang.String	getDNATwoLetter(java.lang.Character c)
static java.lang.Character	getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)
static boolean	isStandardChemComp(ChemComp cc)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChemCompTools

public ChemCompTools()

Method Detail

getAminoOneLetter

public static java.lang.Character getAminoOneLetter(java.lang.String chemCompId)

getDNAOneLetter

public static java.lang.Character getDNAOneLetter(java.lang.String chemCompId)

getAminoThreeLetter

public static java.lang.String getAminoThreeLetter(java.lang.Character c)

getDNATwoLetter

public static java.lang.String getDNATwoLetter(java.lang.Character c)

isStandardChemComp

public static final boolean isStandardChemComp(ChemComp cc)

getOneLetterCode

public static java.lang.Character getOneLetterCode(ChemComp cc,
                                                   ChemicalComponentDictionary dictionary)