Uses of Class
org.biojava.bio.structure.Compound

Packages that use Compound

Package	Description
org.biojava.bio.structure	Interfaces and classes for protein structure (PDB).

Uses of Compound in org.biojava.bio.structure

Methods in org.biojava.bio.structure that return Compound

Modifier and Type	Method	Description
Compound	Compound.clone()
Compound	Structure.getCompoundById(java.lang.String molId)	request a particular compound by its id
Compound	StructureImpl.getCompoundById(java.lang.String molId)
Compound	Chain.getHeader()	Returns the Header ( a Compound object) for this chain.
Compound	ChainImpl.getHeader()	Returns the Header ( a Compound object) for this chain.

Methods in org.biojava.bio.structure that return types with arguments of type Compound

Modifier and Type	Method	Description
java.util.List<Compound>	Structure.getCompounds()	get all the Compounds that are defined in the PDB Header
java.util.List<Compound>	StructureImpl.getCompounds()

Methods in org.biojava.bio.structure with parameters of type Compound

Modifier and Type	Method	Description
void	Chain.setHeader(Compound molId)	Set the Header from the PDB file.
void	ChainImpl.setHeader(Compound mol)	Set the Header from the PDB file.

Method parameters in org.biojava.bio.structure with type arguments of type Compound

Modifier and Type	Method	Description
void	Structure.setCompounds(java.util.List<Compound> molList)	set the compounts
void	StructureImpl.setCompounds(java.util.List<Compound> molList)