Package org.biojava.bio.seq.io.agave

Class AGAVEMapLocation

java.lang.Object

org.biojava.bio.seq.io.agave.AGAVEMapLocation

public class AGAVEMapLocation
extends java.lang.Object

Author:

Hanning Ni Doubletwist Inc, Greg Cox

Constructor Summary

Constructors

Constructor	Description
AGAVEMapLocation()

Method Summary

Modifier and Type	Method	Description
void	addPosition(AGAVEMapPosition pos)
java.lang.String	getChromosome()
java.lang.String	getMapType()
java.lang.String	getOrientation()
AGAVEMapPosition	getPosition1()
AGAVEMapPosition	getPosition2()
java.lang.String	getSource()
java.lang.String	getSubSeqStart()
java.lang.String	getUnits()
void	setChromosome(java.lang.String value)
void	setMapType(java.lang.String value)
void	setOrientation(java.lang.String value)
void	setSource(java.lang.String value)
void	setSubSeqStart(java.lang.String value)
void	setUnits(java.lang.String value)
java.lang.String	toString()
java.lang.String	toString(java.lang.String indent, java.lang.String indent_unit)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AGAVEMapLocation

public AGAVEMapLocation()

Method Detail

addPosition

public void addPosition(AGAVEMapPosition pos)

getPosition1

public AGAVEMapPosition getPosition1()

getPosition2

public AGAVEMapPosition getPosition2()

setMapType

public void setMapType(java.lang.String value)

getMapType

public java.lang.String getMapType()

setUnits

public void setUnits(java.lang.String value)

getUnits

public java.lang.String getUnits()

setSource

public void setSource(java.lang.String value)

getSource

public java.lang.String getSource()

setChromosome

public void setChromosome(java.lang.String value)

getChromosome

public java.lang.String getChromosome()

setSubSeqStart

public void setSubSeqStart(java.lang.String value)

getSubSeqStart

public java.lang.String getSubSeqStart()

setOrientation

public void setOrientation(java.lang.String value)

getOrientation

public java.lang.String getOrientation()

toString

public java.lang.String toString(java.lang.String indent,
                                 java.lang.String indent_unit)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object