Package org.biojava.bio.gui.sequence

Class SixFrameZiggyRenderer

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.gui.sequence.SixFrameZiggyRenderer

All Implemented Interfaces:

java.io.Serializable, FeatureRenderer, Changeable

public class SixFrameZiggyRenderer
extends AbstractChangeable
implements FeatureRenderer, java.io.Serializable

A feature renderer that computes the data necessary to render multi-exon transcripts without CDS data.

The actual drawing is done by a child renderer. In this case, SixFrameRenderer is used, which can use data from this renderer to display transcripts in the correct translation frames.

Author:

David Huen

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
SixFrameZiggyRenderer(SixFrameRenderer pane)

Method Summary

Modifier and Type	Method	Description
double	getBlockDepth()
double	getDepth(SequenceRenderContext src)
java.awt.Paint	getFill()
java.awt.Paint	getOutline()
FeatureHolder	processMouseEvent(FeatureHolder hits, SequenceRenderContext src, java.awt.event.MouseEvent me)
void	renderFeature(java.awt.Graphics2D g, Feature f, SequenceRenderContext context)
void	setBlockDepth(double depth)
void	setFill(java.awt.Paint p)
void	setOutline(java.awt.Paint p)

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SixFrameZiggyRenderer

public SixFrameZiggyRenderer(SixFrameRenderer pane)

Method Detail

setFill

public void setFill(java.awt.Paint p)
             throws ChangeVetoException

Throws:

ChangeVetoException

getFill

public java.awt.Paint getFill()

setOutline

public void setOutline(java.awt.Paint p)
                throws ChangeVetoException

Throws:

ChangeVetoException

getOutline

public java.awt.Paint getOutline()

setBlockDepth

public void setBlockDepth(double depth)
                   throws ChangeVetoException

Throws:

ChangeVetoException

getBlockDepth

public double getBlockDepth()

getDepth

public double getDepth(SequenceRenderContext src)

Specified by:

getDepth in interface FeatureRenderer

renderFeature

public void renderFeature(java.awt.Graphics2D g,
                          Feature f,
                          SequenceRenderContext context)

Specified by:

renderFeature in interface FeatureRenderer

processMouseEvent

public FeatureHolder processMouseEvent(FeatureHolder hits,
                                       SequenceRenderContext src,
                                       java.awt.event.MouseEvent me)

Specified by:

processMouseEvent in interface FeatureRenderer