Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement

Package	Description
org.biojava.bio.alignment	Classes to generate and describe sequence alignments.

Uses of AlignmentElement in org.biojava.bio.alignment

Classes in org.biojava.bio.alignment that implement AlignmentElement

Modifier and Type	Class	Description
class	SimpleAlignmentElement	SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Methods in org.biojava.bio.alignment that return AlignmentElement

Modifier and Type	Method	Description
protected AlignmentElement	FlexibleAlignment.getAE(java.lang.Object label)

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement

Modifier and Type	Method	Description
void	ARAlignment.addSequence(AlignmentElement ae)
void	FlexibleAlignment.addSequence(AlignmentElement ae)	add a new a alignment usings a location to the reference sequence.