Package org.biojava.bio.seq.io.agave

Interface StAXContentHandler

All Known Implementing Classes:

AGAVEAltIdsPropHandler, AGAVEAnnotationsHandler, AGAVEAssemblyHandler, AGAVEBioSeqHandler, AGAVEBioSequenceHandler, AGAVECdsHandler, AGAVEChromosomeHandler, AGAVEClassificationHandler, AGAVECompResultHandler, AGAVEComputationHandler, AGAVEContigHandler, AGAVEDbIdPropHandler, AGAVEDescPropHandler, AGAVEElementIdPropHandler, AGAVEEvidenceHandler, AGAVEExonsPropHandler, AGAVEFragmentOrderHandler, AGAVEFragmentOrientationHandler, AGAVEGeneHandler, AGAVEHandler, AGAVEIdAliasPropHandler, AGAVEKeywordPropHandler, AGAVEMapLocationPropHandler, AGAVEMapPositionPropHandler, AGAVEMatchAlignPropHandler, AGAVEMatchDescPropHandler, AGAVEMatchRegionPropHandler, AGAVEMrnaHandler, AGAVENotePropHandler, AGAVEPredictedProteinHandler, AGAVEQualifierPropHandler, AGAVEQueryRegionPropHandler, AGAVERelatedAnnotPropHandler, AGAVEResultGroupHandler, AGAVEResultPropertyPropHandler, AGAVESciPropertyPropHandler, AGAVESeqFeatureHandler, AGAVESeqLocationPropHandler, AGAVESeqMapHandler, AGAVESeqPropHandler, AGAVETranscriptHandler, AGAVEUnorderedFragmentsHandler, AGAVEViewPropHandler, AGAVEXrefPropHandler, AGAVEXrefPropPropHandler, AGAVEXrefsPropHandler, StAXContentHandlerBase, StAXFeatureHandler, StAXPropertyHandler

public interface StAXContentHandler

Interface for StAX content handlers. This interface is very similar in spirit and design to the SAX content handler. Differences are:

1. start/endDocument methods are replaced by start/endTree. This recognises the fact that a StAX content handler may only see a sub-tree of an XML document, rather than the whole document.
2. the startElement method takes a DelegationManager, allowing delegation of sub-trees to other content handlers.

Author:

copied from Thomas Down

Method Summary

Modifier and Type	Method	Description
void	characters(char[] ch, int start, int length)
void	endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler delegate)
void	endPrefixMapping(java.lang.String prefix)
void	endTree()
void	ignorableWhitespace(char[] ch, int start, int length)
void	processingInstruction(java.lang.String target, java.lang.String data)
void	setDocumentLocator(org.xml.sax.Locator locator)
void	skippedEntity(java.lang.String name)
void	startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs, DelegationManager dm)
void	startPrefixMapping(java.lang.String prefix, java.lang.String uri)
void	startTree()

Method Detail

startTree

void startTree()
        throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

endTree

void endTree()
      throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

characters

void characters(char[] ch,
                int start,
                int length)
         throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

ignorableWhitespace

void ignorableWhitespace(char[] ch,
                         int start,
                         int length)
                  throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

startPrefixMapping

void startPrefixMapping(java.lang.String prefix,
                        java.lang.String uri)
                 throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

endPrefixMapping

void endPrefixMapping(java.lang.String prefix)
               throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

processingInstruction

void processingInstruction(java.lang.String target,
                           java.lang.String data)
                    throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

setDocumentLocator

void setDocumentLocator(org.xml.sax.Locator locator)

skippedEntity

void skippedEntity(java.lang.String name)
            throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

startElement

void startElement(java.lang.String nsURI,
                  java.lang.String localName,
                  java.lang.String qName,
                  org.xml.sax.Attributes attrs,
                  DelegationManager dm)
           throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException

endElement

void endElement(java.lang.String nsURI,
                java.lang.String localName,
                java.lang.String qName,
                StAXContentHandler delegate)
         throws org.xml.sax.SAXException

Throws:

org.xml.sax.SAXException