Package org.biojava.bio.seq.io.agave

Class AGAVEXrefs

  • public class AGAVEXrefs
extends java.lang.Object
    xrefs
    Author:
    Hanning Ni Doubletwist Inc, Greg Cox

    • Constructor Summary

      Constructors 
      Constructor Description
      AGAVEXrefs()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void addDbId​(AGAVEDbId id)
      add @param id
      void addXref​(AGAVEXref xref)
      add @param xref
      java.util.Iterator getDbIds()
      return a set of DbId
      java.util.Iterator getXrefs()
      return a set of AGAVEXref
      java.lang.String toString()
      the agave xml representation of xrefs
      java.lang.String toString​(java.lang.String indent, java.lang.String indent_unit)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Constructor Detail

      • AGAVEXrefs

        public AGAVEXrefs()

    • Method Detail

      • addDbId

        public void addDbId​(AGAVEDbId id)
        add @param id

      • addXref

        public void addXref​(AGAVEXref xref)
        add @param xref

      • getDbIds

        public java.util.Iterator getDbIds()
        return a set of DbId

      • getXrefs

        public java.util.Iterator getXrefs()
        return a set of AGAVEXref

      • toString

        public java.lang.String toString​(java.lang.String indent,
                                 java.lang.String indent_unit)
        Parameters:
        indent - the leading space
        indent_unit - the unit of indenting for xml format

      • toString

        public java.lang.String toString()
        the agave xml representation of xrefs
        Overrides:
        toString in class java.lang.Object