Package org.biojava.bio.seq.io

Class SymbolListCharSequence

  • All Implemented Interfaces:
    java.lang.CharSequence
    public class SymbolListCharSequence
extends java.lang.Object
implements java.lang.CharSequence
    SymbolListCharSequence is a CharSequence implementation which wraps a SymbolList. It is present primarily to support regular expression matching over SymbolLists as it avoids creating a copy.
    Since:
    1.3
    Author:
    Keith James, Matthew Pocock

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      char charAt​(int index)  
      int length()  
      java.lang.CharSequence subSequence​(int start, int end)  
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

      • Methods inherited from interface java.lang.CharSequence

        chars, codePoints

    • Constructor Detail

      • SymbolListCharSequence

        public SymbolListCharSequence​(SymbolList syms)
        Creates a new SymbolListCharSequence wrapping a SymbolList.
        Parameters:
        syms - a SymbolList.

    • Method Detail

      • charAt

        public char charAt​(int index)
        Specified by:
        charAt in interface java.lang.CharSequence

      • length

        public int length()
        Specified by:
        length in interface java.lang.CharSequence

      • subSequence

        public java.lang.CharSequence subSequence​(int start,
                                          int end)
        Specified by:
        subSequence in interface java.lang.CharSequence

      • toString

        public java.lang.String toString()
        Specified by:
        toString in interface java.lang.CharSequence
        Overrides:
        toString in class java.lang.Object