Package org.biojava.bio.program.ssbind

Class SeqSimilarityStAXAdapter

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXAdapter

All Implemented Interfaces:

StAXContentHandler

public class SeqSimilarityStAXAdapter
extends StAXContentHandlerBase

SeqSimilarityStAXAdapter is a handler for XML conforming to the BioJava BlastLike DTD. Together with its modular delegate handlers it converts XML into calls on a SearchContentHandler interface. Implementations of the at interface create various types of Java object from the XML data.

Since:

1.3

Author:

Keith James

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	NAMESPACE

Constructor Summary

Constructors

Constructor	Description
SeqSimilarityStAXAdapter()

Method Summary

Modifier and Type	Method	Description
void	endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler)
SearchContentHandler	getSearchContentHandler()	getSearchContentHandler gets the handler which will receive the method calls generated by the adapter.
void	setSearchContentHandler(SearchContentHandler scHandler)	setSearchContentHandler sets the handler which will recieve the method calls generated by the adapter.
void	startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs, DelegationManager dm)

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAMESPACE

public static final java.lang.String NAMESPACE

See Also:

Constant Field Values

Constructor Detail

SeqSimilarityStAXAdapter

public SeqSimilarityStAXAdapter()

Method Detail

startElement

public void startElement(java.lang.String nsURI,
                         java.lang.String localName,
                         java.lang.String qName,
                         org.xml.sax.Attributes attrs,
                         DelegationManager dm)
                  throws org.xml.sax.SAXException

Specified by:

startElement in interface StAXContentHandler

Overrides:

startElement in class StAXContentHandlerBase

Throws:

org.xml.sax.SAXException

endElement

public void endElement(java.lang.String nsURI,
                       java.lang.String localName,
                       java.lang.String qName,
                       StAXContentHandler handler)
                throws org.xml.sax.SAXException

Specified by:

endElement in interface StAXContentHandler

Overrides:

endElement in class StAXContentHandlerBase

Throws:

org.xml.sax.SAXException

getSearchContentHandler

public SearchContentHandler getSearchContentHandler()

getSearchContentHandler gets the handler which will receive the method calls generated by the adapter.

Returns:

a SearchContentHandler.

setSearchContentHandler

public void setSearchContentHandler(SearchContentHandler scHandler)

setSearchContentHandler sets the handler which will recieve the method calls generated by the adapter.

Parameters:

scHandler - a SearchContentHandler.