Package org.biojava.bio.program.ssbind

Class HitStAXHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

org.biojava.bio.program.ssbind.HitStAXHandler

All Implemented Interfaces:

StAXContentHandler

public class HitStAXHandler
extends SeqSimilarityStAXHandler

AlignmentStAXHandler handles the Hit element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

Field Summary

Fields

Modifier and Type	Field	Description
static StAXHandlerFactory	HIT_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

ssContext

Method Summary

Modifier and Type	Method	Description
protected void	handleEndElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName)
protected void	handleStartElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs)

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

addHandler, endElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HIT_HANDLER_FACTORY

public static final StAXHandlerFactory HIT_HANDLER_FACTORY

Method Detail

handleStartElement

protected void handleStartElement(java.lang.String nsURI,
                                  java.lang.String localName,
                                  java.lang.String qName,
                                  org.xml.sax.Attributes attrs)
                           throws org.xml.sax.SAXException

Overrides:

handleStartElement in class SeqSimilarityStAXHandler

Throws:

org.xml.sax.SAXException

handleEndElement

protected void handleEndElement(java.lang.String nsURI,
                                java.lang.String localName,
                                java.lang.String qName)
                         throws org.xml.sax.SAXException

Overrides:

handleEndElement in class SeqSimilarityStAXHandler

Throws:

org.xml.sax.SAXException