Package org.biojava.bio.program.abi

Class ABIFParser.TaggedDataRecord

java.lang.Object

org.biojava.bio.program.abi.ABIFParser.TaggedDataRecord

Enclosing class:

ABIFParser

public static class ABIFParser.TaggedDataRecord
extends java.lang.Object

An aggregate immutable type for an ABIF tagged data record. See the Tibbets paper (referenced in the javadoc for ABIFParser) for more information.

Field Summary

Fields

Modifier and Type	Field	Description
long	crypticVariable
static int	DATA_TYPE_ASCII_ARRAY
static int	DATA_TYPE_DATE
static int	DATA_TYPE_FLOAT
static int	DATA_TYPE_INTEGER
static int	DATA_TYPE_PSTRING
static int	DATA_TYPE_TIME
long	dataRecord
int	dataType
int	elementLength
boolean	hasOffsetData
long	numberOfElements
byte[]	offsetData
long	recordLength
char[]	tagName
long	tagNumber

Constructor Summary

Constructors

Constructor	Description
TaggedDataRecord(ABIFParser.DataAccess din)	Creates a new TaggedDataRecord from the next 28 bytes of din.

Method Summary

Modifier and Type	Method	Description
java.lang.String	toString()	A very verbose toString that dumps all of the data in this record in a human-readable format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DATA_TYPE_ASCII_ARRAY

public static final int DATA_TYPE_ASCII_ARRAY

See Also:

Constant Field Values

DATA_TYPE_INTEGER

public static final int DATA_TYPE_INTEGER

See Also:

Constant Field Values

DATA_TYPE_FLOAT

public static final int DATA_TYPE_FLOAT

See Also:

Constant Field Values

DATA_TYPE_DATE

public static final int DATA_TYPE_DATE

See Also:

Constant Field Values

DATA_TYPE_TIME

public static final int DATA_TYPE_TIME

See Also:

Constant Field Values

DATA_TYPE_PSTRING

public static final int DATA_TYPE_PSTRING

See Also:

Constant Field Values

tagName

public final char[] tagName

tagNumber

public final long tagNumber

dataType

public final int dataType

elementLength

public final int elementLength

numberOfElements

public final long numberOfElements

recordLength

public final long recordLength

dataRecord

public final long dataRecord

crypticVariable

public final long crypticVariable

hasOffsetData

public final boolean hasOffsetData

offsetData

public final byte[] offsetData

Constructor Detail

TaggedDataRecord

public TaggedDataRecord(ABIFParser.DataAccess din)
                 throws java.io.IOException

Creates a new TaggedDataRecord from the next 28 bytes of din.

Parameters:

din - the source of the raw data to be parsed

Throws:

java.io.IOException - if there's a problem with din

Method Detail

toString

public java.lang.String toString()

A very verbose toString that dumps all of the data in this record in a human-readable format.

Overrides:

toString in class java.lang.Object