org.biojava.bio.program.gff

Class GFFRecordFilter.SourceFilter

java.lang.Object

org.biojava.bio.program.gff.GFFRecordFilter.SourceFilter

All Implemented Interfaces:

GFFRecordFilter

Enclosing interface:

GFFRecordFilter

public static class GFFRecordFilter.SourceFilter
extends java.lang.Object
implements GFFRecordFilter

Implementation of GFFRecordFilter that accepts records based upon the source field.

Author:

Matthew Pocock

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

ACCEPT_ALL

Constructor Summary

Constructors

Constructor and Description
SourceFilter()
SourceFilter(java.lang.String source)

Method Summary

Modifier and Type	Method and Description
boolean	accept(GFFRecord record) Return whether or not to accept record.
java.lang.String	getSource() Retrieve the current source.
void	setSource(java.lang.String source) Set the source to source.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SourceFilter

public SourceFilter()

SourceFilter

public SourceFilter(java.lang.String source)

Method Detail

getSource

public java.lang.String getSource()

Retrieve the current source.

Returns:

the source String

setSource

public void setSource(java.lang.String source)

Set the source to source.

Parameters:

source - the new source to match

accept

public boolean accept(GFFRecord record)

Description copied from interface: GFFRecordFilter

Return whether or not to accept record.

Specified by:

accept in interface GFFRecordFilter

Parameters:

record - the GFFRecord to filter

Returns:

record. getSource() == this.getSource()