org.biojava.bio.program.gff

Class GFFRecordFilter.FeatureFilter

java.lang.Object

org.biojava.bio.program.gff.GFFRecordFilter.FeatureFilter

All Implemented Interfaces:

GFFRecordFilter

Enclosing interface:

GFFRecordFilter

public static class GFFRecordFilter.FeatureFilter
extends java.lang.Object
implements GFFRecordFilter

Implementation of GFFRecordFilter that accepts records based upon the feature field.

Author:

Matthew Pocock

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.program.gff.GFFRecordFilter

ACCEPT_ALL

Constructor Summary

Constructors

Constructor and Description
FeatureFilter()
FeatureFilter(java.lang.String feature)

Method Summary

Modifier and Type	Method and Description
boolean	accept(GFFRecord record) Return whether or not to accept record.
java.lang.String	getFeature() Retrieve the current feature.
void	setFeature(java.lang.String feature) Set the feature to feature.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureFilter

public FeatureFilter()

FeatureFilter

public FeatureFilter(java.lang.String feature)

Method Detail

setFeature

public void setFeature(java.lang.String feature)

Set the feature to feature.

Parameters:

feature - the feature

getFeature

public java.lang.String getFeature()

Retrieve the current feature.

Returns:

the feature String

accept

public boolean accept(GFFRecord record)

Description copied from interface: GFFRecordFilter

Return whether or not to accept record.

Specified by:

accept in interface GFFRecordFilter

Parameters:

record - the GFFRecord to filter

Returns:

record. getFeature() == this.getFeature()