org.biojava.bio.program.abi

Class ABIFChromatogram.Parser

java.lang.Object

org.biojava.bio.program.abi.ABIFParser

org.biojava.bio.program.abi.ABIFChromatogram.Parser

Enclosing class:

ABIFChromatogram

protected class ABIFChromatogram.Parser
extends ABIFParser

An extension of ABIFParser that reads the particular fields from the ABIF that contain the chromatogram data and initializes the fields in its enclosing ABIFChromatogram instance.

Nested Class Summary

Nested classes/interfaces inherited from class org.biojava.bio.program.abi.ABIFParser

ABIFParser.DataAccess, ABIFParser.TaggedDataRecord

Constructor Summary

Constructors

Constructor and Description
Parser(java.io.File f)
Parser(java.io.InputStream in)

Method Summary

Methods inherited from class org.biojava.bio.program.abi.ABIFParser

decodeDNAToken, getAllDataRecords, getDataAccess, getDataRecord

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Parser

public Parser(java.io.InputStream in)
       throws java.io.IOException,
              UnsupportedChromatogramFormatException

Throws:

java.io.IOException

UnsupportedChromatogramFormatException

Parser

public Parser(java.io.File f)
       throws java.io.IOException,
              UnsupportedChromatogramFormatException

Throws:

java.io.IOException

UnsupportedChromatogramFormatException