org.biojavax.bio.db.biosql

Class BioSQLFeatureFilter.HibernateFeatureFilter

java.lang.Object

org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter

All Implemented Interfaces:

java.io.Serializable, FeatureFilter, BioSQLFeatureFilter

Direct Known Subclasses:

BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation

Enclosing interface:

BioSQLFeatureFilter

public abstract static class BioSQLFeatureFilter.HibernateFeatureFilter
extends java.lang.Object
implements BioSQLFeatureFilter

A filter for Hibernate-BioSQL filters to extend.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter

BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools

Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter

FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.reflect.Method	and
protected java.lang.reflect.Method	conjunctAdd
protected java.lang.reflect.Method	conjunction
protected java.lang.reflect.Method	disjunctAdd
protected java.lang.reflect.Method	disjunction
protected java.lang.reflect.Method	eq
protected java.lang.reflect.Method	ge
protected java.lang.reflect.Method	le
protected java.lang.reflect.Method	not
protected java.lang.reflect.Method	or

Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter

all, none

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

leaf, top_level

Constructor Summary

Constructors

Constructor and Description
BioSQLFeatureFilter.HibernateFeatureFilter()

Method Summary

Methods

Modifier and Type	Method and Description
java.util.Map	criterionAliasMap() Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter

asCriterion

Methods inherited from interface org.biojava.bio.seq.FeatureFilter

accept

Field Detail

not

protected java.lang.reflect.Method not

and

protected java.lang.reflect.Method and

or

protected java.lang.reflect.Method or

eq

protected java.lang.reflect.Method eq

le

protected java.lang.reflect.Method le

ge

protected java.lang.reflect.Method ge

conjunction

protected java.lang.reflect.Method conjunction

disjunction

protected java.lang.reflect.Method disjunction

conjunctAdd

protected java.lang.reflect.Method conjunctAdd

disjunctAdd

protected java.lang.reflect.Method disjunctAdd

Constructor Detail

BioSQLFeatureFilter.HibernateFeatureFilter

public BioSQLFeatureFilter.HibernateFeatureFilter()

Method Detail

criterionAliasMap

public java.util.Map criterionAliasMap()

Description copied from interface: BioSQLFeatureFilter

Returns a map of property names (keys) to aliases (values), if the criterion returned by asCriterion() uses aliases at all. If not, then it must at least return the empty map else you'll get NullPointerExceptions thrown elsewhere.

Specified by:

criterionAliasMap in interface BioSQLFeatureFilter

Returns:

Map a map of property names to aliases used in the criterion.