org.biojava.utils.automata

Class NfaSubModel

java.lang.Object

org.biojava.utils.automata.NfaSubModel

All Implemented Interfaces:

NfaBuilder

public class NfaSubModel
extends java.lang.Object
implements NfaBuilder

This class caches a reference to all objects that it directs its delegate to make. These references make it relatively easy for it to duplicate all objects made through this class.

Method Summary

Methods

Modifier and Type	Method and Description
org.biojava.utils.automata.FiniteAutomaton.Transition	addEpsilonTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)
org.biojava.utils.automata.FiniteAutomaton.Transition	addLambdaTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end)
org.biojava.utils.automata.FiniteAutomaton.Node	addNode(boolean isTerminal)
org.biojava.utils.automata.FiniteAutomaton.Transition	addTransition(org.biojava.utils.automata.FiniteAutomaton.Node start, org.biojava.utils.automata.FiniteAutomaton.Node end, Symbol sym)
void	append(NfaSubModel submodel)
org.biojava.utils.automata.FiniteAutomaton.NodeSet	createNodeSet()
NfaSubModel	duplicate() Makes a deep clone of this instance.
FiniteAutomaton	getAutomaton()
org.biojava.utils.automata.FiniteAutomaton.Node	getEnd()
org.biojava.utils.automata.FiniteAutomaton.NodeSet	getNodes()
org.biojava.utils.automata.FiniteAutomaton.Node	getStart()
java.util.Set	getTransitions()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

getAutomaton

public FiniteAutomaton getAutomaton()

Specified by:

getAutomaton in interface NfaBuilder

getStart

public org.biojava.utils.automata.FiniteAutomaton.Node getStart()

Specified by:

getStart in interface NfaBuilder

getEnd

public org.biojava.utils.automata.FiniteAutomaton.Node getEnd()

Specified by:

getEnd in interface NfaBuilder

addNode

public org.biojava.utils.automata.FiniteAutomaton.Node addNode(boolean isTerminal)

Specified by:

addNode in interface NfaBuilder

addTransition

public org.biojava.utils.automata.FiniteAutomaton.Transition addTransition(org.biojava.utils.automata.FiniteAutomaton.Node start,
                                                                  org.biojava.utils.automata.FiniteAutomaton.Node end,
                                                                  Symbol sym)

Specified by:

addTransition in interface NfaBuilder

addEpsilonTransition

public org.biojava.utils.automata.FiniteAutomaton.Transition addEpsilonTransition(org.biojava.utils.automata.FiniteAutomaton.Node start,
                                                                         org.biojava.utils.automata.FiniteAutomaton.Node end)

Specified by:

addEpsilonTransition in interface NfaBuilder

addLambdaTransition

public org.biojava.utils.automata.FiniteAutomaton.Transition addLambdaTransition(org.biojava.utils.automata.FiniteAutomaton.Node start,
                                                                        org.biojava.utils.automata.FiniteAutomaton.Node end)

Specified by:

addLambdaTransition in interface NfaBuilder

getNodes

public org.biojava.utils.automata.FiniteAutomaton.NodeSet getNodes()

Specified by:

getNodes in interface NfaBuilder

getTransitions

public java.util.Set getTransitions()

Specified by:

getTransitions in interface NfaBuilder

createNodeSet

public org.biojava.utils.automata.FiniteAutomaton.NodeSet createNodeSet()

Specified by:

createNodeSet in interface NfaBuilder

duplicate

public NfaSubModel duplicate()

Makes a deep clone of this instance.

append

public void append(NfaSubModel submodel)

toString

public java.lang.String toString()

Specified by:

toString in interface NfaBuilder

Overrides:

toString in class java.lang.Object