Package org.biojava.bio.structure.gui

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.

See: Description

Class Summary

Class	Description
AlignmentGui	A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.
BiojavaJmol	A class that provides a simple GUI for Jmol
JMatrixPanel	a JPanel that can display a difference of distance matrix and paths that have been taken for the alignment
RasmolCommandListener	a utility class that listens to Ramsol script commands in the @link BiojavaJmol class
ScaleableMatrixPanel	A JPanel that can display the underlying distance matrix data of the protein structure alignment algorithm.
SequenceDisplay	A sequence display that can show the results of a protein structure alignment.

Package org.biojava.bio.structure.gui Description

A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui.