org.biojava.bio.seq.io.agave

Class AGAVEXrefsPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEXrefsPropHandler

All Implemented Interfaces:

AGAVEDbIdCallbackItf, AGAVEXrefCallbackItf, StAXContentHandler

public class AGAVEXrefsPropHandler
extends StAXPropertyHandler
implements AGAVEDbIdCallbackItf, AGAVEXrefCallbackItf

Deals with database crossreferences (xrefs)

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_XREFS_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Methods

Modifier and Type	Method and Description
void	addDbId(AGAVEDbId db_id)
void	addXref(AGAVEXref xref)
void	endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler) Element specific exit handler Subclass to do anything useful.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_XREFS_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_XREFS_PROP_HANDLER_FACTORY

Method Detail

addDbId

public void addDbId(AGAVEDbId db_id)

Specified by:

addDbId in interface AGAVEDbIdCallbackItf

addXref

public void addXref(AGAVEXref xref)

Specified by:

addXref in interface AGAVEXrefCallbackItf

endElementHandler

public void endElementHandler(java.lang.String nsURI,
                     java.lang.String localName,
                     java.lang.String qName,
                     StAXContentHandler handler)
                       throws org.xml.sax.SAXException

Description copied from class: StAXPropertyHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXPropertyHandler

Throws:

org.xml.sax.SAXException