org.biojava.bio.seq.io.agave

Class AGAVEClassificationHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXFeatureHandler

org.biojava.bio.seq.io.agave.AGAVEClassificationHandler

All Implemented Interfaces:

AGAVEIdAliasCallbackItf, StAXContentHandler

public class AGAVEClassificationHandler
extends StAXFeatureHandler
implements AGAVEIdAliasCallbackItf

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_CLASSIFICATION_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures

Method Summary

Methods

Modifier and Type	Method and Description
void	addIdAlias(AGAVEIdAlias id)
void	endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler) Element specific exit handler Subclass to do anything useful.
void	startElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs) Element-specific handler.

Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler

addFeatureToSequence, addHandler, createTemplate, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_CLASSIFICATION_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_CLASSIFICATION_HANDLER_FACTORY

Method Detail

startElementHandler

public void startElementHandler(java.lang.String nsURI,
                       java.lang.String localName,
                       java.lang.String qName,
                       org.xml.sax.Attributes attrs)
                         throws org.xml.sax.SAXException

Description copied from class: StAXFeatureHandler

Element-specific handler. Subclass this to do something useful!

Overrides:

startElementHandler in class StAXFeatureHandler

Throws:

org.xml.sax.SAXException

addIdAlias

public void addIdAlias(AGAVEIdAlias id)

Specified by:

addIdAlias in interface AGAVEIdAliasCallbackItf

endElementHandler

public void endElementHandler(java.lang.String nsURI,
                     java.lang.String localName,
                     java.lang.String qName,
                     StAXContentHandler handler)
                       throws org.xml.sax.SAXException

Description copied from class: StAXFeatureHandler

Element specific exit handler Subclass to do anything useful.

Overrides:

endElementHandler in class StAXFeatureHandler

Throws:

org.xml.sax.SAXException