org.biojava.bio.seq.io

Class ReferenceAnnotation

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.AbstractAnnotation

org.biojava.bio.seq.io.ReferenceAnnotation

All Implemented Interfaces:

java.io.Serializable, Annotation, Changeable

Deprecated.

Use org.biojavax.bio.seq.io framework instead

public class ReferenceAnnotation
extends AbstractAnnotation

Since:

1.3.1

Author:

Lorna Morris

See Also:

Serialized Form

Field Summary

Fields inherited from interface org.biojava.bio.Annotation

EMPTY_ANNOTATION, PROPERTY

Constructor Summary

Constructors

Constructor and Description
ReferenceAnnotation() Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
protected java.util.Map	getProperties() Deprecated. Implement this to return the Map delegate.
protected boolean	propertiesAllocated() Deprecated. A convenience method to see if we have allocated the properties Map.

Methods inherited from class org.biojava.bio.AbstractAnnotation

asMap, containsProperty, equals, getProperty, hashCode, keys, removeProperty, setProperty, toString

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

ReferenceAnnotation

public ReferenceAnnotation()

Deprecated.

Method Detail

getProperties

protected java.util.Map getProperties()

Deprecated.

Description copied from class: AbstractAnnotation

Implement this to return the Map delegate. Modifying this return value will modify the properties associated with this annotation. From code in the 1.2 version of AbstractAnnotation This is required for the implementation of an Annotation that extends AbstractAnnotation. Where possible implementations should be backed with a LinkedHashMap or similar so properties are iterated in the order they were added.

Specified by:

getProperties in class AbstractAnnotation

Returns:

a Map containing all properties

propertiesAllocated

protected boolean propertiesAllocated()

Deprecated.

Description copied from class: AbstractAnnotation

A convenience method to see if we have allocated the properties Map. This is required for the implementation of an Annotation that extends AbstractAnnotation.

Specified by:

propertiesAllocated in class AbstractAnnotation

Returns:

true if the properties have been allocated, false otherwise