org.biojava.bio.seq.db.biosql

Class BioSQLSequenceDBProvider

java.lang.Object

org.biojava.bio.seq.db.biosql.BioSQLSequenceDBProvider

All Implemented Interfaces:

SequenceDBProvider

Deprecated.

Use hibernate and org.biojavax.bio.db.*

public class BioSQLSequenceDBProvider
extends java.lang.Object
implements SequenceDBProvider

Author:

Thomas Down

Constructor Summary

Constructors

Constructor and Description
BioSQLSequenceDBProvider() Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.String	getName() Deprecated. The name of this provider.
SequenceDBLite	getSequenceDB(java.util.Map config) Deprecated. Get a sequence database.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioSQLSequenceDBProvider

public BioSQLSequenceDBProvider()

Deprecated.

Method Detail

getName

public java.lang.String getName()

Deprecated.

Description copied from interface: SequenceDBProvider

The name of this provider.

Specified by:

getName in interface SequenceDBProvider

Returns:

the provider's name.

getSequenceDB

public SequenceDBLite getSequenceDB(java.util.Map config)
                             throws RegistryException,
                                    BioException

Deprecated.

Description copied from interface: SequenceDBProvider

Get a sequence database.

Specified by:

getSequenceDB in interface SequenceDBProvider

Parameters:

config - a Map containing key-value pairs identifying the database to resolve.

Returns:

a SequenceDBLite that was resolved.

Throws:

RegistryException

BioException