org.biojava.bio.seq

Class FeatureFilter.HasAnnotation

java.lang.Object

org.biojava.bio.seq.FeatureFilter.ByAnnotationType

org.biojava.bio.seq.FeatureFilter.HasAnnotation

All Implemented Interfaces:

java.io.Serializable, FeatureFilter, OptimizableFilter

Enclosing interface:

FeatureFilter

public static final class FeatureFilter.HasAnnotation
extends FeatureFilter.ByAnnotationType

Retrieve features that contain a given annotation with any value.

Since:

1.1

Author:

Matthew Pocock, Keith James

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter

FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

all, leaf, none, top_level

Constructor Summary

Constructors

Constructor and Description
FeatureFilter.HasAnnotation(java.lang.Object key) Make a new ByAnnotation that will accept features with an annotation bundle containing any value associated with 'key'.

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.Object	getKey()

Methods inherited from class org.biojava.bio.seq.FeatureFilter.ByAnnotationType

accept, equals, getType, hashCode, isDisjoint, isProperSubset, setType, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

FeatureFilter.HasAnnotation

public FeatureFilter.HasAnnotation(java.lang.Object key)

Make a new ByAnnotation that will accept features with an annotation bundle containing any value associated with 'key'.

Parameters:

key - the Object used as a key in the annotation

Method Detail

getKey

public java.lang.Object getKey()