org.biojava.bio.program.tagvalue

Class Formats

java.lang.Object

org.biojava.bio.program.tagvalue.Formats

public class Formats
extends java.lang.Object

This is intended as a repository for tag-value and AnnotationType information about common file formats. Each format should have an annotaiton type defined as <FormatName>_TYPE and a method create<FormatName>ParserListener(ParserListener listener) that together give you everything needed to parse and represent the format.

Author:

Matthew Pocock

Field Summary

Fields

Modifier and Type	Field and Description
static AnnotationType	EMBL_GENBANK_FEATURE_TABLE_TYPE
static AnnotationType	EMBL_TYPE
static AnnotationType	SWISSPROT_TYPE

Constructor Summary

Constructors

Constructor and Description
Formats()

Method Summary

Methods

Modifier and Type	Method and Description
static ParserListener	createEmblParserListener(TagValueListener listener)
static ParserListener	createSwissprotParserListener(TagValueListener listener)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

EMBL_TYPE

public static final AnnotationType EMBL_TYPE

EMBL_GENBANK_FEATURE_TABLE_TYPE

public static final AnnotationType EMBL_GENBANK_FEATURE_TABLE_TYPE

SWISSPROT_TYPE

public static final AnnotationType SWISSPROT_TYPE

Constructor Detail

Formats

public Formats()

Method Detail

createEmblParserListener

public static final ParserListener createEmblParserListener(TagValueListener listener)

createSwissprotParserListener

public static final ParserListener createSwissprotParserListener(TagValueListener listener)