org.biojava.bio.dp.twohead

Class DPCompiler

java.lang.Object

org.biojava.bio.dp.twohead.DPCompiler

All Implemented Interfaces:

CellCalculatorFactoryMaker

public class DPCompiler
extends java.lang.Object
implements CellCalculatorFactoryMaker

This is an implementation of CellCalculatorFactoryMaker that compiles the HMM object down to Java byte-code that is equivalent in behaviour to the interpreter.

Since:

1.1

Author:

Matthew Pocock, Greg Cox

Constructor Summary

Constructors

Constructor and Description
DPCompiler(boolean dumpToDisk)

Method Summary

Methods

Modifier and Type	Method and Description
java.lang.Class	generateBackwardClass(DP dp)
java.lang.Class	generateForardClass(DP dp)
java.lang.Class	generateViterbiClass(DP dp)
CellCalculatorFactory	make(DP dp)
static java.lang.String	makeName(java.lang.String prefix, MarkovModel model)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DPCompiler

public DPCompiler(boolean dumpToDisk)

Method Detail

make

public CellCalculatorFactory make(DP dp)

Specified by:

make in interface CellCalculatorFactoryMaker

makeName

public static java.lang.String makeName(java.lang.String prefix,
                        MarkovModel model)

generateForardClass

public java.lang.Class generateForardClass(DP dp)

generateBackwardClass

public java.lang.Class generateBackwardClass(DP dp)

generateViterbiClass

public java.lang.Class generateViterbiClass(DP dp)