edu.msu.cme.rdp.multicompare

Class MCSample

java.lang.Object

edu.msu.cme.rdp.multicompare.MCSample

Direct Known Subclasses:

MCSampleResult

public class MCSample
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
MCSample(java.io.File f)
MCSample(java.io.File sampleFile, java.io.File dupCountFile)
MCSample(java.io.File in, java.lang.String sampleName)
MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName)
MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName, java.io.File dupCountFile)
MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader, java.lang.String name)
MCSample(java.lang.String sampleName)
MCSample(java.lang.String sampleName, java.io.File dupCountFile)

Method Summary

Modifier and Type	Method and Description
void	addRankCount(ClassificationResult result)
java.util.Map<java.lang.String,int[]>	getBootstrapCountTable()
static int	getBootstrapIndex(double d)
int	getDupCount(java.lang.String seqName)
ClassifierSequence	getNextSeq()
java.lang.String	getSampleName()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MCSample

public MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader,
                java.lang.String name)

MCSample

public MCSample(java.io.File f)
         throws java.io.IOException

Throws:

java.io.IOException

MCSample

public MCSample(java.lang.String sampleName)

MCSample

public MCSample(java.lang.String sampleName,
                java.io.File dupCountFile)
         throws java.io.IOException

Throws:

java.io.IOException

MCSample

public MCSample(java.util.List<ClassifierSequence> sampleSeqs,
                java.lang.String sampleName)

MCSample

public MCSample(java.util.List<ClassifierSequence> sampleSeqs,
                java.lang.String sampleName,
                java.io.File dupCountFile)
         throws java.io.IOException

Throws:

java.io.IOException

MCSample

public MCSample(java.io.File in,
                java.lang.String sampleName)
         throws java.io.IOException

Throws:

java.io.IOException

MCSample

public MCSample(java.io.File sampleFile,
                java.io.File dupCountFile)
         throws java.io.IOException

Throws:

java.io.IOException

Method Detail

getSampleName

public java.lang.String getSampleName()

getNextSeq

public ClassifierSequence getNextSeq()
                              throws java.io.IOException

Throws:

java.io.IOException

getDupCount

public int getDupCount(java.lang.String seqName)

addRankCount

public void addRankCount(ClassificationResult result)

getBootstrapIndex

public static int getBootstrapIndex(double d)

getBootstrapCountTable

public java.util.Map<java.lang.String,int[]> getBootstrapCountTable()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object