API Reference

• nibabel
  • Website
  • Mailing Lists
  • Code
  • License
  • Quickstart
  • get_info
• affines
  • append_diag
  • apply_affine
  • dot_reduce
  • from_matvec
  • to_matvec
• analyze
  • The Analyze header format
    • Notes
  • AnalyzeHeader
  • AnalyzeImage
  • load
• arrayproxy
  • ArrayProxy
  • is_proxy
• arraywriters
  • ArrayWriter
  • ScalingError
  • SlopeArrayWriter
  • SlopeInterArrayWriter
  • WriterError
  • get_slope_inter
  • make_array_writer
• batteryrunners
  • More about checks
  • BatteryRunner
  • Report
• benchmarks
  • Module: benchmarks.bench_array_to_file
  • Module: benchmarks.bench_fileslice
  • Module: benchmarks.bench_finite_range
  • Module: benchmarks.bench_load_save
  • Module: benchmarks.butils
    • bench_array_to_file
    • bench_fileslice
    • run_slices
    • bench_finite_range
    • bench_load_save
    • print_git_title
• casting
  • CastingError
  • FloatingError
  • able_int_type
  • as_int
  • best_float
  • ceil_exact
  • float_to_int
  • floor_exact
  • floor_log2
  • have_binary128
  • int_abs
  • int_to_float
  • longdouble_lte_float64
  • longdouble_precision_improved
  • ok_floats
  • on_powerpc
  • shared_range
  • type_info
  • ulp
• checkwarns
  • ErrorWarnings
  • IgnoreWarnings
• data
  • Bomber
  • BomberError
  • DataError
  • Datasource
  • VersionedDatasource
  • datasource_or_bomber
  • find_data_dir
  • get_data_path
  • make_datasource
• deprecated
  • FutureWarningMixin
  • ModuleProxy
• dft
  • CachingError
  • DFTError
  • InstanceStackError
  • VolumeError
  • clear_cache
  • get_studies
  • update_cache
• ecat
  • EcatHeader
  • EcatImage
  • EcatImageArrayProxy
  • EcatSubHeader
  • get_frame_order
  • get_series_framenumbers
  • load
  • read_mlist
  • read_subheaders
• environment
  • get_home_dir
  • get_nipy_system_dir
  • get_nipy_user_dir
• eulerangles
  • angle_axis2euler
  • euler2angle_axis
  • euler2mat
  • euler2quat
  • mat2euler
  • quat2euler
• fileholders
  • FileHolder
  • FileHolderError
  • copy_file_map
• filename_parser
  • TypesFilenamesError
  • parse_filename
  • splitext_addext
  • types_filenames
• fileslice
  • calc_slicedefs
  • canonical_slicers
  • fileslice
  • fill_slicer
  • is_fancy
  • optimize_read_slicers
  • optimize_slicer
  • predict_shape
  • read_segments
  • slice2len
  • slice2outax
  • slicers2segments
  • strided_scalar
  • threshold_heuristic
• freesurfer
  • Module: freesurfer.io
  • Module: freesurfer.mghformat
    • read_annot
    • read_geometry
    • read_label
    • read_morph_data
    • write_annot
    • write_geometry
    • MGHError
    • MGHHeader
    • MGHImage
    • load
• funcs
  • as_closest_canonical
  • concat_images
  • four_to_three
  • squeeze_image
• gifti
  • Module: gifti.gifti
  • Module: gifti.giftiio
  • Module: gifti.parse_gifti_fast
  • Module: gifti.util
    • GiftiCoordSystem
    • GiftiDataArray
    • GiftiImage
    • GiftiLabel
    • GiftiLabelTable
    • GiftiMetaData
    • GiftiNVPairs
    • data_tag
    • read
    • write
    • Outputter
    • parse_gifti_file
    • read_data_block
• imageclasses
• imageglobals
  • ErrorLevel
  • LoggingOutputSuppressor
• keywordonly
  • kw_only_func
  • kw_only_meth
• loadsave
  • guessed_image_type
  • load
  • save
  • which_analyze_type
• minc
• minc1
  • Minc1File
  • Minc1Image
  • MincError
  • MincFile
  • MincHeader
  • MincImage
  • MincImageArrayProxy
• minc2
  • Hdf5Bunch
  • Minc2File
  • Minc2Image
• mriutils
  • MRIError
  • calculate_dwell_time
• nicom
  • Module: nicom.csareader
  • Module: nicom.dicomreaders
  • Module: nicom.dicomwrappers
  • Module: nicom.dwiparams
  • Module: nicom.structreader
  • Module: nicom.utils
    • CSAError
    • CSAReadError
    • get_acq_mat_txt
    • get_b_matrix
    • get_b_value
    • get_csa_header
    • get_g_vector
    • get_ice_dims
    • get_n_mosaic
    • get_scalar
    • get_slice_normal
    • get_vector
    • is_mosaic
    • nt_str
    • read
    • DicomReadError
    • mosaic_to_nii
    • read_mosaic_dir
    • read_mosaic_dwi_dir
    • slices_to_series
    • MosaicWrapper
    • MultiframeWrapper
    • SiemensWrapper
    • Wrapper
    • WrapperError
    • WrapperPrecisionError
    • none_or_close
    • wrapper_from_data
    • wrapper_from_file
    • B2q
    • nearest_pos_semi_def
    • q2bg
    • Unpacker
    • find_private_section
• nifti1
  • Nifti1Extension
  • Nifti1Extensions
  • Nifti1Header
  • Nifti1Image
  • Nifti1Pair
  • Nifti1PairHeader
  • load
  • save
• nifti2
  • Nifti2Header
  • Nifti2Image
  • Nifti2Pair
  • Nifti2PairHeader
  • load
  • save
• onetime
  • References
  • OneTimeProperty
  • ResetMixin
  • auto_attr
  • setattr_on_read
• openers
  • BufferedGzipFile
  • Opener
• optpkg
  • optional_package
• orientations
  • OrientationError
  • aff2axcodes
  • apply_orientation
  • axcodes2ornt
  • flip_axis
  • inv_ornt_aff
  • io_orientation
  • ornt2axcodes
  • ornt_transform
• parrec
  • PAR file format
    • General information
    • Image information
  • Orientation
  • Data type
  • PARRECArrayProxy
  • PARRECError
  • PARRECHeader
  • PARRECImage
  • load
  • one_line
  • parse_PAR_header
  • vol_is_full
  • vol_numbers
• py3k
  • asbytes_nested
  • asunicode
  • asunicode_nested
  • getexception
  • ints2bytes
  • isfileobj
  • open_latin1
• quaternions
  • angle_axis2mat
  • angle_axis2quat
  • conjugate
  • eye
  • fillpositive
  • inverse
  • isunit
  • mat2quat
  • mult
  • nearly_equivalent
  • norm
  • quat2angle_axis
  • quat2mat
  • rotate_vector
• rstutils
  • rst_table
• spaces
  • slice2volume
  • vox2out_vox
• spatialimages
  • There are several ways of writing data.
  • Files interface
  • Header
  • HeaderDataError
  • HeaderTypeError
  • ImageDataError
  • ImageFileError
  • SpatialImage
  • supported_np_types
• spm2analyze
  • Spm2AnalyzeHeader
  • Spm2AnalyzeImage
• spm99analyze
  • Spm99AnalyzeHeader
  • Spm99AnalyzeImage
  • SpmAnalyzeHeader
• tmpdirs
  • InGivenDirectory
  • InTemporaryDirectory
  • TemporaryDirectory
• trackvis
  • DataError
  • HeaderError
  • TrackvisFile
  • TrackvisFileError
  • aff_from_hdr
  • aff_to_hdr
  • empty_header
  • read
  • write
• tripwire
  • TripWire
  • TripWireError
  • is_tripwire
• volumeutils
  • BinOpener
  • DtypeMapper
  • Recoder
  • allopen
  • apply_read_scaling
  • array_from_file
  • array_to_file
  • best_write_scale_ftype
  • better_float_of
  • finite_range
  • fname_ext_ul_case
  • int_scinter_ftype
  • make_dt_codes
  • pretty_mapping
  • rec2dict
  • seek_tell
  • shape_zoom_affine
  • working_type
  • write_zeros
• wrapstruct
  • wrapstruct
    • Mappingness
    • Consistency checks
  • LabeledWrapStruct
  • WrapStruct
  • WrapStructError