general Directory Reference

Directories
	test

Files
	BaseAsciiMap.cpp
	BaseAsciiMap.h
	BaseQualityHelper.cpp
	BaseQualityHelper.h
	BaseUtilities.cpp
	BaseUtilities.h
	BasicHash.cpp
	BasicHash.h
	BgzfFileType.cpp
	BgzfFileType.h
	BgzfFileTypeRecovery.cpp
	BgzfFileTypeRecovery.h
	CharBuffer.cpp
	CharBuffer.h
	Chromosome.cpp
	Chromosome.h
	Cigar.cpp
	Cigar.h
	CigarRoller.cpp
	CigarRoller.h
	Constant.h
	CSG_MD5.h
	Error.cpp
	Error.h
	ErrorHandler.cpp
	ErrorHandler.h
	FileType.cpp
	FileType.h
	FortranFormat.cpp
	FortranFormat.h
	Generic.cpp
	Generic.h
	GenomeSequence.cpp
	GenomeSequence.h
	GenomeSequenceHelpers.h
	GenotypeLists.cpp
	GenotypeLists.h
	glfHandler.cpp
	glfHandler.h
	GreedyTupleAligner.h
	GzipFileType.cpp
	GzipFileType.h
	GzipHeader.cpp
	GzipHeader.h
	Hash.cpp
	Hash.h
	IndexBase.cpp
	IndexBase.h
	InplaceMerge.cpp
	InplaceMerge.h
	Input.cpp
	Input.h
	InputFile.cpp
	InputFile.h
	IntArray.cpp
	IntArray.h
	IntHash.cpp
	IntHash.h
	LongHash.h
	LongInt.h
	LongLongCounter.cpp
	LongLongCounter.h
	MapFunction.cpp
	MapFunction.h
	MathConstant.h
	MathMatrix.cpp
	MathMatrix.h
	MathVector.cpp
	MathVector.h
	MemoryAllocators.cpp
	MemoryAllocators.h
	MemoryInfo.cpp
	MemoryInfo.h
	MemoryMap.cpp
	MemoryMap.h
	MemoryMapArray.cpp
	MemoryMapArray.h
	MiniDeflate.cpp
	MiniDeflate.h
	NonOverlapRegions.cpp
	NonOverlapRegions.h
	PackedVector.h
	Parameters.cpp
	Parameters.h
	Pedigree.cpp
	Pedigree.h
	PedigreeAlleleFreq.cpp
	PedigreeAlleleFreq.h
	PedigreeAlleles.h
	PedigreeDescription.cpp
	PedigreeDescription.h
	PedigreeFamily.cpp
	PedigreeFamily.h
	PedigreeGlobals.cpp
	PedigreeGlobals.h
	PedigreeLoader.cpp
	PedigreePerson.cpp
	PedigreePerson.h
	PedigreeTrim.cpp
	PedigreeTwin.cpp
	Performance.h
	PhoneHome.cpp
	PhoneHome.h
	QuickIndex.cpp
	QuickIndex.h
	Random.cpp
	Random.h
	ReferenceSequence.cpp
	ReferenceSequence.h
	ReusableVector.h
	SimpleStats.h
	SmithWaterman.cpp
	SmithWaterman.h
	Sort.cpp
	Sort.h
	StatGenStatus.cpp
	StatGenStatus.h
	STLUtilities.cpp
	STLUtilities.h
	String.cpp
	StringAlias.cpp
	StringAlias.h
	StringArray.cpp
	StringArray.h
	StringBasics.cpp
	StringBasics.h
	StringHash.cpp
	StringHash.h
	StringMap.cpp
	StringMap.h
	Tabix.cpp
	Tabix.h
	TrimSequence.h
	UncompressedFileType.cpp
	UncompressedFileType.h
	UnitTest.h