pappso::TimsFrame::XicComputeStructure Struct Reference

Public Member Functions
	XicComputeStructure (const TimsFrame *fram_p, const XicCoordTims &xic_struct)

Public Attributes
Xic *	xic_ptr = nullptr
std::size_t	mobilityIndexBegin
std::size_t	mobilityIndexEnd
std::size_t	mzIndexLowerBound
std::size_t	mzIndexUpperBound
double	tmpIntensity = 0

Detailed Description

Definition at line 273 of file timsframe.h.

Constructor & Destructor Documentation

XicComputeStructure()

pappso::TimsFrame::XicComputeStructure::XicComputeStructure	(	const TimsFrame *	fram_p,
		const XicCoordTims &	xic_struct )

Definition at line 38 of file timsframe.cpp.

{
  xic_ptr = xic_struct.xicSptr.get();
 
  mobilityIndexBegin = xic_struct.scanNumBegin;
  mobilityIndexEnd   = xic_struct.scanNumEnd;
  mzIndexLowerBound  = fram_p->getMzCalibrationInterfaceSPtr().get()->getTofIndexFromMz(
    xic_struct.mzRange.lower()); // convert mz to raw digitizer value
  mzIndexUpperBound =
    fram_p->getMzCalibrationInterfaceSPtr().get()->getTofIndexFromMz(xic_struct.mzRange.upper());
  tmpIntensity = 0;
}

References pappso::TimsFrame::TimsFrame(), pappso::TimsFrameBase::getMzCalibrationInterfaceSPtr(), pappso::MzRange::lower(), mobilityIndexBegin, mobilityIndexEnd, mzIndexLowerBound, mzIndexUpperBound, pappso::XicCoord::mzRange, pappso::XicCoordTims::scanNumBegin, pappso::XicCoordTims::scanNumEnd, tmpIntensity, pappso::MzRange::upper(), xic_ptr, and pappso::XicCoord::xicSptr.

Member Data Documentation

mobilityIndexBegin

std::size_t pappso::TimsFrame::XicComputeStructure::mobilityIndexBegin

Definition at line 280 of file timsframe.h.

Referenced by XicComputeStructure().

mobilityIndexEnd

std::size_t pappso::TimsFrame::XicComputeStructure::mobilityIndexEnd

Definition at line 281 of file timsframe.h.

Referenced by XicComputeStructure().

mzIndexLowerBound

std::size_t pappso::TimsFrame::XicComputeStructure::mzIndexLowerBound

Definition at line 282 of file timsframe.h.

Referenced by XicComputeStructure().

mzIndexUpperBound

std::size_t pappso::TimsFrame::XicComputeStructure::mzIndexUpperBound

Definition at line 283 of file timsframe.h.

Referenced by XicComputeStructure().

tmpIntensity

double pappso::TimsFrame::XicComputeStructure::tmpIntensity = 0

Definition at line 284 of file timsframe.h.

Referenced by XicComputeStructure().

xic_ptr

Xic* pappso::TimsFrame::XicComputeStructure::xic_ptr = nullptr

Definition at line 279 of file timsframe.h.

Referenced by XicComputeStructure().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/vendors/tims/timsframe.h
• pappsomspp/core/vendors/tims/timsframe.cpp